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Jamboree dimensionality reduction metrics #317
Merged
scottgigante-immunai
merged 20 commits into
openproblems-bio:main
from
lazappi:dimred-metrics
Mar 16, 2022
Merged
Jamboree dimensionality reduction metrics #317
scottgigante-immunai
merged 20 commits into
openproblems-bio:main
from
lazappi:dimred-metrics
Mar 16, 2022
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* master: Update alra.py Update alra.R pre-commit Create alra.R pre-commit Update alra.py make var names unique for tenx data loader Force docker_build on `master` Dockerfile bugfix Update CONTRIBUTING.md Update README.md Create alra.py Delete alra.py Create alra.py
* master: fix region fix nf wkdir use env.BRANCH rm echo BRANCH -> WKDIR for s3 set branch variable in S3 setup job Fix s3 bucket clash Dimred methods preprocessing (openproblems-bio#301) Add trustworthiness score for dimred task (openproblems-bio#258) Add Method SCOT to Multi-modal data Integration Task (openproblems-bio#298) Update README.md Update README.md Update README.md
Add density metric
Add NN ranking metric
* master: Update alra.py (openproblems-bio#304) updated template for PR with PR evaluation checks (openproblems-bio#314)
mvinyard
approved these changes
May 28, 2021
lazappi
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to lazappi/openproblems
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Mar 24, 2022
* upstream/main: Convert normalizers to return anndata (openproblems-bio#329) require anndata<0.8 (openproblems-bio#336) Fix GPG key for R install (openproblems-bio#334) Fix R dependencies for docker build (openproblems-bio#331) Jamboree dimensionality reduction datasets (openproblems-bio#316) Jamboree dimensionality reduction metrics (openproblems-bio#317) use cmake==3.18.4 for multicoretsne build (openproblems-bio#328) Update 'master' to 'main' on CI (openproblems-bio#326) New key breaks r docker container build (openproblems-bio#322)
rcannood
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Sep 4, 2024
* remove multimodal starter dataset * fix indentation --------- Co-authored-by: Robrecht Cannoodt <[email protected]>
rcannood
added a commit
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Sep 4, 2024
* remove multimodal starter dataset * fix indentation --------- Co-authored-by: Robrecht Cannoodt <[email protected]> Former-commit-id: 2cf2a73
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Submission type
Testing
Submission guidelines
PR review checklist
This PR will be evaluated on the basis of the following checks:
__init__.py
and were tested in the pipelineDescription
This PR contains the following new dimensionality reduction metrics from the jamboree: