nf-nomad #11
Open
nf-nomad #11
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
abhi18av
force-pushed
the
abhinav/nf-nomad
branch
from
cf203e9 to
2d73f41
Compare
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Rob Syme <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Marcel Ribeiro-Dantas <[email protected]>
Signed-off-by: Ben Sherman <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]>
…4056) Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Justin Herr <[email protected]>
Signed-off-by: Ben Sherman <[email protected]> Co-authored-by: Marcel Ribeiro-Dantas <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]>
…extflow-io#4046) Signed-off-by: Florian De Temmerman <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Duncan Parkes <[email protected]>
…ow-io#4067) Signed-off-by: Phil Ewels <[email protected]>
This commit add the `cpu_model` in the Nextflow trace record. Note: the field is not included in the default trace file, but it can be added by adding in the nextflow config the setting ``` trace.fields = '..,cpu_model' ``` Signed-off-by: Sabrina Krakau <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Ben Sherman <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Fritjof Lammers <[email protected]> Signed-off-by: Fritjof Lammers <[email protected]> Signed-off-by: Ben Sherman <[email protected]> Co-authored-by: Ben Sherman <[email protected]>
nxf_parallel runs a number of processes in parallel, distributing them across a limited number of workers. Prior to PR nextflow-io#1884, errors were not being checked. PR#1884 was intended to remedy this but effectively only checked the _last_ command to exit (which was, unfortunately the case that was tested for). Processes that exit while there is still work going on were not being "waited" on, so their exit status was not being checked, and failures were escaping unnoticed. This commit: - updates the loop that's tracking the work so that it waits on processes that have exited; and - updates the test cases so that the failing command is _not_ the last in the list and ensures that the templated text is as expected. Signed-off-by: George Hartzell <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Ben Sherman <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
This commit remove the weblog as a core feature and move it into a plugin maintained separately. See the link below https://github.com/nextflow-io/nf-weblog Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Ben Sherman <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
…o#4400) [ci fast] Signed-off-by: Marcel Ribeiro-Dantas <[email protected]>
Co-authored-by: Rory Nolan <[email protected]>
Signed-off-by: Ben Sherman <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Ben Sherman <[email protected]> Signed-off-by: Paolo Di Tommaso <[email protected]> Co-authored-by: Phil Ewels <[email protected]> Co-authored-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
Signed-off-by: Paolo Di Tommaso <[email protected]>
abhi18av
force-pushed
the
abhinav/nf-nomad
branch
from
0456fc3 to
911a86e
Compare
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.