Bioinformatics Lab - Department of Computer Science - University Freiburg

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77 repositories

AxoWise
Public
An integrated graph system of biological entities, functional terms, and publications.
sql neo4j proteins graph-database gephi network-analysis cypher pathway
Vue
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Apache License 2.0
•0•5•15•0•Updated Dec 26, 2024Dec 26, 2024
CRISPRidentify
Public
Python
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MIT License
•7•25•2•0•Updated Dec 23, 2024Dec 23, 2024
CRISPRcasIdentifier
Public
Machine learning for accurate identification and classification of CRISPR-Cas systems
machine-learning crispr-cas-systems cas-proteins crispr-subtypes
Python
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GNU General Public License v3.0
•6•20•0•0•Updated Dec 20, 2024Dec 20, 2024
BrainDead
Public
BrainDead - RNA classification via accessible k-mers
Jupyter Notebook
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GNU General Public License v3.0
•1•0•0•0•Updated Dec 16, 2024Dec 16, 2024
ML_LS_resources
Public
ML in Life Science resources - hands-on lectures, hands-on exercise solutions
Jupyter Notebook
•0•2•0•0•Updated Dec 12, 2024Dec 12, 2024
HVSeeker
Public
Python
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MIT License
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
Optimierung-pages
Public
JavaScript
•0•0•0•0•Updated Nov 25, 2024Nov 25, 2024
BioinformaticsI-pages
Public
JavaScript
•0•0•0•0•Updated Nov 20, 2024Nov 20, 2024
IntaRNA
Public
Efficient target prediction incorporating accessibility of interaction sites
tool structure rna interaction bioinformatics
C++
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Other
•27•46•26•1•Updated Nov 11, 2024Nov 11, 2024
Long_Range_RNA_Interactions
Public
Genomic long range RNA-RNA interactions in flaviviruses
Python
•1•0•1•0•Updated Jul 15, 2024Jul 15, 2024
BioinformaticsII-pages
Public
JavaScript
•0•0•0•0•Updated Jun 25, 2024Jun 25, 2024
B2_01_hidden_markov_models
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Apr 30, 2024Apr 30, 2024
B2_10_intro_mapping
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Apr 16, 2024Apr 16, 2024
B2_06_BLAST
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Apr 16, 2024Apr 16, 2024
B2_00_intro_to_classroom
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Apr 16, 2024Apr 16, 2024
MutARNA
Public
Jupyter Notebook
•3•1•0•0•Updated Mar 21, 2024Mar 21, 2024
RBPBench
Public
Python
•0•1•0•0•Updated Mar 20, 2024Mar 20, 2024
LocARNA_consensus_constraint
Public
R
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MIT License
•0•0•0•0•Updated Mar 4, 2024Mar 4, 2024
RNA-Playground
Public
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
bioinformatics alignment rna algorithm teaching nussinov structure-prediction
JavaScript
•16•38•1•0•Updated Feb 28, 2024Feb 28, 2024
Cherri
Public
Python
•
GNU General Public License v3.0
•0•0•17•3•Updated Feb 26, 2024Feb 26, 2024
LatPack
Public
Collection of tools related to modelling and folding simulations of lattice-protein models with arbitrary energy functions
C++
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MIT License
•1•1•0•0•Updated Feb 7, 2024Feb 7, 2024
V_RNA-pages
Public
JavaScript
•0•0•0•0•Updated Feb 2, 2024Feb 2, 2024
B1_10_tree-UPGMA
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 25, 2024Jan 25, 2024
B1_09_align-msa
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jan 25, 2024Jan 25, 2024
B1_08_PAM
Public template
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Jan 11, 2024Jan 11, 2024
B1_05_align-local
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 28, 2023Nov 28, 2023
B1_04_align-affine-gap
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 20, 2023Nov 20, 2023
B1_02_edit-distance
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 15, 2023Nov 15, 2023
B1_03_align-linear-gap
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Nov 15, 2023Nov 15, 2023
B1_01_biology-basics
Public template
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Oct 23, 2023Oct 23, 2023