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@BackofenLab

Bioinformatics Lab - Department of Computer Science - University Freiburg

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  1. IntaRNA IntaRNA Public

    Efficient target prediction incorporating accessibility of interaction sites

    C++ 46 27

  2. RNA-Playground RNA-Playground Public

    Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

    JavaScript 38 16

  3. CRISPRidentify CRISPRidentify Public

    Python 25 7

  4. GGL GGL Public

    Graph Grammar Library

    C++ 23 6

  5. CRISPRcasIdentifier CRISPRcasIdentifier Public

    Machine learning for accurate identification and classification of CRISPR-Cas systems

    Python 20 6

  6. GraphClust-2 GraphClust-2 Public

    A pipeline for structural clustering of RNA secondary structures

    Python 15 4

Repositories

Showing 10 of 77 repositories
  • AxoWise Public

    An integrated graph system of biological entities, functional terms, and publications.

    BackofenLab/AxoWise’s past year of commit activity
    Vue 5 Apache-2.0 0 15 0 Updated Dec 26, 2024
  • BackofenLab/CRISPRidentify’s past year of commit activity
    Python 25 MIT 7 2 0 Updated Dec 23, 2024
  • CRISPRcasIdentifier Public

    Machine learning for accurate identification and classification of CRISPR-Cas systems

    BackofenLab/CRISPRcasIdentifier’s past year of commit activity
    Python 20 GPL-3.0 6 0 0 Updated Dec 20, 2024
  • BrainDead Public

    BrainDead - RNA classification via accessible k-mers

    BackofenLab/BrainDead’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Dec 16, 2024
  • ML_LS_resources Public

    ML in Life Science resources - hands-on lectures, hands-on exercise solutions

    BackofenLab/ML_LS_resources’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Dec 12, 2024
  • HVSeeker Public
    BackofenLab/HVSeeker’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 26, 2024
  • BackofenLab/Optimierung-pages’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 25, 2024
  • BackofenLab/BioinformaticsI-pages’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 20, 2024
  • IntaRNA Public

    Efficient target prediction incorporating accessibility of interaction sites

    BackofenLab/IntaRNA’s past year of commit activity
    C++ 46 27 26 1 Updated Nov 11, 2024
  • Long_Range_RNA_Interactions Public Forked from MatthiasHerrmann/Long_Range_RNA_Interactions

    Genomic long range RNA-RNA interactions in flaviviruses

    BackofenLab/Long_Range_RNA_Interactions’s past year of commit activity
    Python 0 1 1 0 Updated Jul 15, 2024

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