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Support SAM vector tags #2011

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Support SAM vector tags #2011

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@ohad-rodeh ohad-rodeh commented Nov 29, 2023 •
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A SAM file can be an input for STAR. For example, by using the these command line options:

 --readFilesIn  MYFILE.sam
--readFilesType SAM SE 
--readFilesSAMattrKeep All 
--readFilesCommand samtools view

The output SAM file retains the tags from the original SAM file (MYFILE.sam). This works well, except for vector tags, that are discarded. This code enhancement support those tags as well.

@ohad-rodeh ohad-rodeh changed the title Support vector tags in SAM. Support SAM vector tags Nov 29, 2023
@alexdobin alexdobin added this to the 2.7.12 milestone Jan 2, 2024
@ohad-rodeh ohad-rodeh force-pushed the support_sam_vector_tags branch from 0df23e9 to 77232a3 Compare February 15, 2024 10:10
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@ohad-rodeh @alexdobin