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899 Open 1,167 Closed
899 Open 1,167 Closed
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Issues list

Inquiry about Chimeric Junction Identification in scRNA-seq Data Analysis
#2254 opened Dec 13, 2024 by luojinqin
Missing reads in Transcriptome BAM file when using --quantMode TranscriptomeSAM
#2253 opened Dec 12, 2024 by suzietallon
how to enable clipping on 5'- and 3'- end with no penalty
#2252 opened Dec 11, 2024 by sotuamax
Alternative diagnosis & solution for: FATAL ERROR: could not open genome file STARgenomeIndex/genomeParameters.txt
#2251 opened Dec 10, 2024 by anderswe
GeneFull_ExonOverIntron - Error of segmentation (core dumped) "${cmd}" "$@"
#2250 opened Dec 5, 2024 by wjbsb
Huge difference in mapping rates between two mouse tissues?
#2249 opened Dec 2, 2024 by jdrnevich
1
Strange behaviour of the percentages of unmapped reads when mapping to highly repetitive regions
#2248 opened Dec 2, 2024 by nikitin-p
GeneFull Mapping Discrepancy
#2247 opened Nov 27, 2024 by mattg478
STARsolo and Cellranger (v8) differences in estimating number of cells
#2245 opened Nov 21, 2024 by angelasanzo
Add RG ID to cell barcodes
#2244 opened Nov 20, 2024 by drneavin
How to include the lane index in STARsolo count matrix barcodes.tsv?
#2243 opened Nov 19, 2024 by mkarikom
How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
#2241 opened Nov 14, 2024 by mkarikom
Velocyto question
#2239 opened Nov 13, 2024 by Liripo
1
STARsolo settings for SMART-seq3
#2238 opened Nov 7, 2024 by apredeus
What's the difference between "outSAMstrandField" and "outFilterIntronMotifs RemoveNoncanonical"
#2237 opened Nov 7, 2024 by hungweichen0327
Multi Mapping Loci Meaning
#2236 opened Nov 6, 2024 by mattg478
Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other Solutions?
#2235 opened Nov 5, 2024 by Vijithkumar2020
Custom refgen generation (scRNA)
#2234 opened Nov 5, 2024 by radiasso
Indexing transcriptome bam file
#2233 opened Nov 2, 2024 by aayushraman
transcriptInfo.tab format
#2232 opened Nov 1, 2024 by starkiller-liuzhiming
Uniquely mapped reads number
#2231 opened Oct 31, 2024 by hamzaaitabbou96
Question about Read Length parameter during reference creation
#2230 opened Oct 27, 2024 by Motoufiq
Overrepresentation of Reads Mapping to Intronic Regions
#2229 opened Oct 23, 2024 by Matthieu-Duot
soloUMIdedup 1MM_Directional_UMItools and 1MM_Directional difference.
#2228 opened Oct 23, 2024 by araboapresyan
Mapping speed of STAR is very different for similar bam
#2227 opened Oct 22, 2024 by dingyaozhang
ProTip! Find all open issues with in progress development work with linked:pr.