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86 Open 228 Closed
86 Open 228 Closed
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Issues list

Increase usablity on other systems by updating (SLURM)/scripts/juicer.sh
#363 opened Dec 12, 2024 by bclaremar
3
Errors in the run log bug
#361 opened Oct 26, 2024 by Hlc813
How can I generate a .hic contact matrix at the fragment level using Micro-C data?
#359 opened Oct 4, 2024 by hanshanmengqi
addnorm: Requested array size exceeds VM limit bug
#357 opened Sep 19, 2024 by jiangshan529
1
too slow to do full genome assemble
#356 opened Jul 22, 2024 by dupuquan
NumberFormatException
#355 opened Jul 22, 2024 by yuchun2323
Too slow to get the inter.hic
#354 opened Jul 16, 2024 by YouxinZhao
1
chimeric_sam.awk bug
#353 opened Jul 10, 2024 by xueqinerer
Thanks - someone else noticed this too and made a pull request and I wrote there as well. See https://github.com/theaidenlab/juicer/pull/26
#352 opened Jun 29, 2024 by Djangodu
1
Modify the chromosome number in the.hIC file
#351 opened May 24, 2024 by shenlinyong
Form a combined .hic file
#350 opened May 22, 2024 by narzouni
Provision of enzymes
#349 opened May 9, 2024 by molinfzl
Treat hap1 and hap2 to as "parents" for diploid.sh
#348 opened Mar 19, 2024 by sarjopp
Not able to see the specified normalizations (using -k) in the hic file after juicertools pre bug
#347 opened Mar 13, 2024 by ashishjain1988
Juicer changes chromosome names bug
#346 opened Mar 4, 2024 by jeramiahsmith
1
Sorted file and dups/no dups files do not add up in dedup step bug
#345 opened Feb 27, 2024 by WeiCSong
2
Trio-binning genome assembly and juicer error
#344 opened Feb 20, 2024 by Larkinhi
samtools sort: fail to open "./samtools.36604.8950.tmp.1019.bam": Too many open files bug
#343 opened Feb 19, 2024 by sanjin725
4
insufficient memory for the Java Runtime Environment - CPU bug
#341 opened Feb 6, 2024 by james-vincent
1
.hic file chr names NC_000001.11
#340 opened Jan 30, 2024 by Luzmist
error with Java when generating out_JBAT.assembly following Yahs protocol (Yet another HIC scaffolding tool) bug
#337 opened Nov 13, 2023 by palasities
Error while Normalizations
#335 opened Oct 3, 2023 by Kaustav-93
2
Installation files absent
#334 opened Sep 28, 2023 by HaikuoLi
1
Juicer memory usage
#333 opened Sep 26, 2023 by Xoey0314
More restriction enzyme sites of Arima than Juicer provided, how to modified juicer.sh bug
#332 opened Sep 26, 2023 by QianghuiZhu
4
ProTip! Exclude everything labeled bug with -label:bug.