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Update README.md
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MicheleBortol authored Sep 5, 2024
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Expand Up @@ -93,11 +93,11 @@ The following fields are available:
- `Config file name` (required, "VitessceConfig-YYYY.MM.DD_HHMMSS.json"): Name of the config file to attach, a ".json" extension is added if missing.
- `Image` (required): OMERO Image to view.
- `Segmentation` (optional, `None`): Label image to overlay on the image, pixel values correspond to cell identities.
- `Cell identities` (optional, `None`): `.csv` file with at least 2 columns: `Cell id column` and `Label column` defined in the 2 fileds below.
- `Cell identities` (optional, `None`): `.csv` file with at least 2 columns: `Cell id column` and `Label column` defined in the 2 fields below.
- `Cell id column` (optional, "cell_id"): Name of the `Cell id column` used in `Cell identities`, `Expression`, `Embeddings`.
- `Label column` (optional, "label"): Name of the `Label` used in `Cell identities`.
- `Expression` (optional, `None`): `.csv` file with the `Cell id column` all other columns are considered as expression values and should be numerical.
- `Embeddings` (optional, `None`): `.csv` file with the `Cell id column` and the `Embedding x` and `Embedding y` columns defined in the 2 fileds below.
- `Embeddings` (optional, `None`): `.csv` file with the `Cell id column` and the `Embedding x` and `Embedding y` columns defined in the 2 fields below.
- `Embedding x` (optional, "UMAP_1"): Name of the `Embedding x` used in `Embeddings`.
- `Embedding y` (optional, "UMAP_2"): Name of the `Embedding y` used in `Embeddings`.
- `Molecules` (optional, `None`): `.csv` file with at least 4 columns: Molecule id, label, x, y (headers in the fields below).
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