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Merge pull request #49 from Hind-M/link_tutorials
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Fix issue #34
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bertrandmichel authored Jul 8, 2021
2 parents b55f25d + 5951ed0 commit f098a34
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2 changes: 1 addition & 1 deletion Tuto-GUDHI-ConfRegions-PersDiag-datapoints.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"In this tutorial, we introduce confidence regions for persistence diagrams built on a set of data points. We present the subsampling approach of [Fasy et al. 2014 AoS](https://projecteuclid.org/download/pdfview_1/euclid.aos/1413810729). An alternative method is the bottleneck bootstrap method introduced in [Chazal etal. 2018](http://www.jmlr.org/papers/v18/15-484.html) and presented in this [notebook](Tuto-GUDHI-ConfRegions-PersDiag-BottleneckBootstrap.ipynb). See [this notebook](Tuto-GUDHI-persistence-diagrams.ipynb) for an introduction to persistence diagrams with Gudhi."
"In this tutorial, we introduce confidence regions for persistence diagrams built on a set of data points. We present the subsampling approach of [Fasy et al. 2014 AoS](https://projecteuclid.org/download/pdfview_1/euclid.aos/1413810729). An alternative method is the bottleneck bootstrap method introduced in [Chazal etal. 2018](http://www.jmlr.org/papers/v18/15-484.html) and presented in this [notebook](Tuto-GUDHI-ConfRegions-PersDiag-BottleneckBootstrap.ipynb). See [this notebook](https://github.com/GUDHI/TDA-tutorial/blob/master/Tuto-GUDHI-persistence-diagrams.ipynb) for an introduction to persistence diagrams with Gudhi."
]
},
{
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2 changes: 1 addition & 1 deletion Tuto-GUDHI-alpha-complex-visualization.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"We are going to [build a simplicial complex from a point cloud](Tuto-GUDHI-simplicial-complexes-from-data-points.ipynb). These points are randomly sampled from a 2-torus."
"We are going to [build a simplicial complex from a point cloud](https://github.com/GUDHI/TDA-tutorial/blob/master/Tuto-GUDHI-simplicial-complexes-from-data-points.ipynb). These points are randomly sampled from a 2-torus."
]
},
{
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4 changes: 2 additions & 2 deletions Tuto-GUDHI-persistence-diagrams.ipynb
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"\n",
"Correlation matrices between residues can be found at this [link](https://www.researchgate.net/publication/301543862_corr). We are greatful to the authors for sharing data.\n",
"\n",
"We start from the Vietoris-Rips filtrations of the Protein binding distance matrices. See this [previous tutorial](Tuto-GUDHI-simplicial-complexes-from-distance-matrix.ipynb) for more details on how to build the Rips complex."
"We start from the Vietoris-Rips filtrations of the Protein binding distance matrices. See this [previous tutorial](https://github.com/GUDHI/TDA-tutorial/blob/master/Tuto-GUDHI-simplicial-complexes-from-distance-matrix.ipynb) for more details on how to build the Rips complex."
]
},
{
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"cell_type": "markdown",
"metadata": {},
"source": [
"We build the Vietoris-Rips complex from the distance matrix `D0`. See this [notebook](Tuto-GUDHI-simplicial-complexes-from-distance-matrix.ipynb) for more details."
"We build the Vietoris-Rips complex from the distance matrix `D0`. See this [notebook](https://github.com/GUDHI/TDA-tutorial/blob/master/Tuto-GUDHI-simplicial-complexes-from-distance-matrix.ipynb) for more details."
]
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{
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2 changes: 1 addition & 1 deletion Tuto-GUDHI-simplicial-complexes-from-data-points.ipynb
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"\n",
"Definition of diameter here?\n",
"\n",
"Vietoris-Rips complexes can be defined for any metric space from the matrix of pairwise distances (see this [notebook](Tuto-GUDHI-simplicial-complexes-from-distance-matrix.ipynb)).\n",
"Vietoris-Rips complexes can be defined for any metric space from the matrix of pairwise distances (see this [notebook](https://github.com/GUDHI/TDA-tutorial/blob/master/Tuto-GUDHI-simplicial-complexes-from-distance-matrix.ipynb)).\n",
"\n",
"In order to efficiently compute an $\\alpha$-Rips complex, one can start by building a topological graph with:\n",
"\n",
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