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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 20 16

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    32 40

Repositories

Showing 10 of 412 repositories
  • phoenix Public

    🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 60 Apache-2.0 18 10 2 Updated Dec 15, 2024
  • eMKF Public
    CDCgov/eMKF’s past year of commit activity
    SAS 2 Apache-2.0 1 0 0 Updated Dec 14, 2024
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 6 2 0 0 Updated Dec 14, 2024
  • pyrenew-hew Public

    Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew

    CDCgov/pyrenew-hew’s past year of commit activity
    Python 5 Apache-2.0 0 50 6 Updated Dec 14, 2024
  • wastewater-informed-covid-forecasting Public

    Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

    CDCgov/wastewater-informed-covid-forecasting’s past year of commit activity
    R 45 Apache-2.0 8 83 (2 issues need help) 4 Updated Dec 14, 2024
  • ixa Public
    CDCgov/ixa’s past year of commit activity
    Rust 10 Apache-2.0 0 12 2 Updated Dec 14, 2024
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    Kotlin 73 CC0-1.0 40 1,222 129 Updated Dec 14, 2024
  • scenarios-hpc-azure Public
    CDCgov/scenarios-hpc-azure’s past year of commit activity
    Python 0 Apache-2.0 0 2 3 Updated Dec 14, 2024
  • ixa-epi-isolation Public
    CDCgov/ixa-epi-isolation’s past year of commit activity
    Rust 0 Apache-2.0 0 1 2 Updated Dec 14, 2024
  • MIRA-NF Public
    CDCgov/MIRA-NF’s past year of commit activity
    Nextflow 3 MIT 1 0 0 Updated Dec 14, 2024
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