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28 Open 0 Closed
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Issues list

create short non-coding RNA annotation pipeline ebi EMBL European Bioinformatics Institute related work ensembl The EnsEMBL project within EBI pipelines Any pipeline related work tree-of-life Tree of Life programme related work
#28 opened Mar 27, 2023 by EreboPSilva
@EreboPSilva
Combine small nextflow pipelines into modules pipelines Any pipeline related work
#27 opened Mar 27, 2023 by sb43
1
Improvements to the ASG cobiont check pipeline pipelines Any pipeline related work tree-of-life Tree of Life programme related work
#26 opened Mar 27, 2023 by eeaunin
Improvements to EVA submission pipelines ebi EMBL European Bioinformatics Institute related work eva pipelines Any pipeline related work
#25 opened Mar 27, 2023 by apriltuesday
1 of 2 tasks
@apriltuesday
Database Documentation documentation Improvements or additions to documentation sanger Wellcome Sanger Institute tree-of-life Tree of Life programme related work
#24 opened Mar 27, 2023 by priyanka-surana
1
Nextflow-VEP - Phase 2 documentation Improvements or additions to documentation ebi EMBL European Bioinformatics Institute related work enhancement New feature or request ensembl The EnsEMBL project within EBI modules Work related to current or new modules pipelines Any pipeline related work singularity
#23 opened Mar 27, 2023 by likhitha-surapaneni
12 of 16 tasks
@likhitha-surapaneni
Add manifest_stats.py to add sequence pipeline ebi EMBL European Bioinformatics Institute related work ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python subworkflows Work related to current or new subworkflows
#22 opened Mar 26, 2023 by Dishalodha
@Dishalodha
Create nf-core pipeline/module for OMArk ebi EMBL European Bioinformatics Institute related work ensembl The EnsEMBL project within EBI modules Work related to current or new modules pipelines Any pipeline related work python This is about programming in python question Further information is requested tree-of-life Tree of Life programme related work
#21 opened Mar 26, 2023 by EreboPSilva
@EreboPSilva
TreeVal - Phase 2 pipelines Any pipeline related work sanger Wellcome Sanger Institute tree-of-life Tree of Life programme related work
#20 opened Mar 24, 2023 by DLBPointon
Convert to nextflow (or outline nextflow workflow) - pipeline for generation of Species (linked to genome Assembly) static content bash ensembl The EnsEMBL project within EBI perl pipelines Any pipeline related work python This is about programming in python
#19 opened Mar 24, 2023 by ens-LCampbell
@JAlvarezJarreta @ens-LCampbell
Create Nextflow process for PhuEgo -- a PPI network propagation pipeline ebi EMBL European Bioinformatics Institute related work pipelines Any pipeline related work python This is about programming in python
#18 opened Mar 24, 2023 by haoqichen20
@haoqichen20
Convert bash MSI pipeline to Nextflow pipelines Any pipeline related work
#17 opened Mar 24, 2023 by Mkalyva
2
Migrate ensembl-genomio:BRC4_genome_prepare pipeline to Nextflow ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python
#16 opened Mar 24, 2023 by JAlvarezJarreta
@JAlvarezJarreta @ens-LCampbell @Dishalodha
Convert HMF pipeline to nextflow ebi EMBL European Bioinformatics Institute related work pipelines Any pipeline related work
#15 opened Mar 24, 2023 by helrick
@jaesvi @helrick @cmsauer
Expand the Genome Compare pipeline to support other sources besides INSDC enhancement New feature or request ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python
#14 opened Mar 23, 2023 by JAlvarezJarreta
Create Nextflow process from ensembl-genomio:BRC4_Genome_Compare:ReportComparisons analysis ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python
#13 opened Mar 23, 2023 by JAlvarezJarreta
Create Nextflow process from ensembl-genomio:BRC4_Genome_Compare:Compare analysis ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python
#12 opened Mar 23, 2023 by JAlvarezJarreta
Create Nextflow process from ensembl-genomio:BRC4_Genome_Compare:INSDC_download analysis ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python
#11 opened Mar 23, 2023 by JAlvarezJarreta
Define Nextflow workflow structure for the new Genome Compare pipeline ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python
#10 opened Mar 23, 2023 by JAlvarezJarreta
Migrate of ensembl-genomio:BRC4_Genome_Compare pipeline from eHive to Nextflow ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python
#9 opened Mar 23, 2023 by JAlvarezJarreta
@JAlvarezJarreta
Port the Cancer mutation census (CMC) project to Nextflow cosmic pipelines Any pipeline related work sanger Wellcome Sanger Institute
#8 opened Mar 20, 2023 by thomasmaurel
@thomasmaurel @syyong
@heymanpreet @helensch @IanVermes
4
Port the Xref Pipelines into Nextflow ensembl The EnsEMBL project within EBI pipelines Any pipeline related work
#7 opened Mar 20, 2023 by TamaraNaboulsi
@TamaraNaboulsi
add clean-up tool to nf-core tools infrastructure Website development or tools to support pipelines
#6 opened Mar 18, 2023 by flass
add bin re-assembly module to nf-core/mag modules Work related to current or new modules
#5 opened Mar 18, 2023 by flass
Reimplement Alphafold pipeline in nextflow ebi EMBL European Bioinformatics Institute related work enhancement New feature or request ensembl The EnsEMBL project within EBI pipelines Any pipeline related work python This is about programming in python
#4 opened Mar 7, 2023 by EbiArnie
@EbiArnie
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