Draft Changelog

This page tracks all changes since the last release of VG.

When you merge a PR, add a bullet point to this page.

When you do a release, copy the changelog from this page and clear it out.

Changes For Next Release

• GBWT construction from a GAM/GAF file now uses parallel construction jobs.
• vg chunk and vg find now generate subpaths with subrange metadata when cutting up paths.
• vg gbwt will accept subranges on fragment 0 and discard the fragment number.
• vg map, vg mpmap, and vg giraffe can now annotate output with SAM-style flags from FASTQ comments with --comments-as-tags
• vg surject now detects when multipath alignments obviously don't belong to the graph they are being surjected to.
• Updated libbdsg to check if a distance index actually has distances and to improve memory use of distance indexing when not including distances
• vg index now includes include flag --no-nested-distance to build a distance index with distances only on the top-level chain
• vg deconstruct -n bug that bypassed some nested sites fixed.
• When reading a .gff3 file with vg rna, validate exon ordering by base-pair position instead of number attribute. This allows reverse-strand exons to be numbered either by base-pair order or transcription order.

Updated Submodules

• sdsl-lite, gcsa2, gbwt, gbwtgraph, libbdsg

New Submodules

Removed submodules