Evolve in CSV format (#4307)

* Update evolution to CSV format

* Update

* Update

* Update

* Update

* Update

* reset args

* reset args

* reset args

* plot_results() fix

* Cleanup

* Cleanup2

.dockerignore

@@ -8,7 +8,7 @@ coco
 storage.googleapis.com
 
 data/samples/*
-**/results*.txt
+**/results*.csv
 *.jpg
 
 # Neural Network weights -----------------------------------------------------------------------------------------------

.gitignore

@@ -30,7 +30,6 @@ data/*
 !data/images/bus.jpg
 !data/*.sh
 
-results*.txt
 results*.csv
 
 # Datasets -------------------------------------------------------------------------------------------------------------

train.py

@@ -37,7 +37,7 @@
     check_requirements, print_mutation, set_logging, one_cycle, colorstr, methods
 from utils.downloads import attempt_download
 from utils.loss import ComputeLoss
-from utils.plots import plot_labels, plot_evolution
+from utils.plots import plot_labels, plot_evolve
 from utils.torch_utils import ModelEMA, select_device, intersect_dicts, torch_distributed_zero_first, de_parallel
 from utils.loggers.wandb.wandb_utils import check_wandb_resume
 from utils.metrics import fitness
@@ -367,7 +367,8 @@ def train(hyp,  # path/to/hyp.yaml or hyp dictionary
             fi = fitness(np.array(results).reshape(1, -1))  # weighted combination of [P, R, [email protected], [email protected]]
             if fi > best_fitness:
                 best_fitness = fi
-            callbacks.on_fit_epoch_end(mloss, results, lr, epoch, best_fitness, fi)
+            log_vals = list(mloss) + list(results) + lr
+            callbacks.on_fit_epoch_end(log_vals, epoch, best_fitness, fi)
 
             # Save model
             if (not nosave) or (final_epoch and not evolve):  # if save
@@ -464,7 +465,7 @@ def main(opt):
         check_requirements(requirements=FILE.parent / 'requirements.txt', exclude=['thop'])
 
     # Resume
-    if opt.resume and not check_wandb_resume(opt):  # resume an interrupted run
+    if opt.resume and not check_wandb_resume(opt) and not opt.evolve:  # resume an interrupted run
         ckpt = opt.resume if isinstance(opt.resume, str) else get_latest_run()  # specified or most recent path
         assert os.path.isfile(ckpt), 'ERROR: --resume checkpoint does not exist'
         with open(Path(ckpt).parent.parent / 'opt.yaml') as f:
@@ -474,8 +475,10 @@ def main(opt):
     else:
         opt.data, opt.cfg, opt.hyp = check_file(opt.data), check_file(opt.cfg), check_file(opt.hyp)  # check files
         assert len(opt.cfg) or len(opt.weights), 'either --cfg or --weights must be specified'
-        opt.name = 'evolve' if opt.evolve else opt.name
-        opt.save_dir = str(increment_path(Path(opt.project) / opt.name, exist_ok=opt.exist_ok or opt.evolve))
+        if opt.evolve:
+            opt.project = 'runs/evolve'
+            opt.exist_ok = opt.resume
+        opt.save_dir = str(increment_path(Path(opt.project) / opt.name, exist_ok=opt.exist_ok))
 
     # DDP mode
     device = select_device(opt.device, batch_size=opt.batch_size)
@@ -533,17 +536,17 @@ def main(opt):
             hyp = yaml.safe_load(f)  # load hyps dict
             if 'anchors' not in hyp:  # anchors commented in hyp.yaml
                 hyp['anchors'] = 3
-        opt.noval, opt.nosave = True, True  # only val/save final epoch
+        opt.noval, opt.nosave, save_dir = True, True, Path(opt.save_dir)  # only val/save final epoch
         # ei = [isinstance(x, (int, float)) for x in hyp.values()]  # evolvable indices
-        yaml_file = Path(opt.save_dir) / 'hyp_evolved.yaml'  # save best result here
+        evolve_yaml, evolve_csv = save_dir / 'hyp_evolve.yaml', save_dir / 'evolve.csv'
         if opt.bucket:
-            os.system(f'gsutil cp gs://{opt.bucket}/evolve.txt .')  # download evolve.txt if exists
+            os.system(f'gsutil cp gs://{opt.bucket}/evolve.csv {save_dir}')  # download evolve.csv if exists
 
         for _ in range(opt.evolve):  # generations to evolve
-            if Path('evolve.txt').exists():  # if evolve.txt exists: select best hyps and mutate
+            if evolve_csv.exists():  # if evolve.csv exists: select best hyps and mutate
                 # Select parent(s)
                 parent = 'single'  # parent selection method: 'single' or 'weighted'
-                x = np.loadtxt('evolve.txt', ndmin=2)
+                x = np.loadtxt(evolve_csv, ndmin=2, delimiter=',', skiprows=1)
                 n = min(5, len(x))  # number of previous results to consider
                 x = x[np.argsort(-fitness(x))][:n]  # top n mutations
                 w = fitness(x) - fitness(x).min() + 1E-6  # weights (sum > 0)
@@ -575,12 +578,13 @@ def main(opt):
             results = train(hyp.copy(), opt, device)
 
             # Write mutation results
-            print_mutation(hyp.copy(), results, yaml_file, opt.bucket)
+            print_mutation(results, hyp.copy(), save_dir, opt.bucket)
 
         # Plot results
-        plot_evolution(yaml_file)
-        print(f'Hyperparameter evolution complete. Best results saved as: {yaml_file}\n'
-              f'Command to train a new model with these hyperparameters: $ python train.py --hyp {yaml_file}')
+        plot_evolve(evolve_csv)
+        print(f'Hyperparameter evolution finished\n'
+              f"Results saved to {colorstr('bold', save_dir)}"
+              f'Use best hyperparameters example: $ python train.py --hyp {evolve_yaml}')
 
 
 def run(**kwargs):

utils/general.py

@@ -615,35 +615,43 @@ def strip_optimizer(f='best.pt', s=''):  # from utils.general import *; strip_op
     print(f"Optimizer stripped from {f},{(' saved as %s,' % s) if s else ''} {mb:.1f}MB")
 
 
-def print_mutation(hyp, results, yaml_file='hyp_evolved.yaml', bucket=''):
-    # Print mutation results to evolve.txt (for use with train.py --evolve)
-    a = '%10s' * len(hyp) % tuple(hyp.keys())  # hyperparam keys
-    b = '%10.3g' * len(hyp) % tuple(hyp.values())  # hyperparam values
-    c = '%10.4g' * len(results) % results  # results (P, R, [email protected], [email protected]:0.95, val_losses x 3)
-    print('\n%s\n%s\nEvolved fitness: %s\n' % (a, b, c))
+def print_mutation(results, hyp, save_dir, bucket):
+    evolve_csv, results_csv, evolve_yaml = save_dir / 'evolve.csv', save_dir / 'results.csv', save_dir / 'hyp_evolve.yaml'
+    keys = ('metrics/precision', 'metrics/recall', 'metrics/mAP_0.5', 'metrics/mAP_0.5:0.95',
+            'val/box_loss', 'val/obj_loss', 'val/cls_loss') + tuple(hyp.keys())  # [results + hyps]
+    keys = tuple(x.strip() for x in keys)
+    vals = results + tuple(hyp.values())
+    n = len(keys)
 
+    # Download (optional)
     if bucket:
-        url = 'gs://%s/evolve.txt' % bucket
-        if gsutil_getsize(url) > (os.path.getsize('evolve.txt') if os.path.exists('evolve.txt') else 0):
-            os.system('gsutil cp %s .' % url)  # download evolve.txt if larger than local
+        url = f'gs://{bucket}/evolve.csv'
+        if gsutil_getsize(url) > (os.path.getsize(evolve_csv) if os.path.exists(evolve_csv) else 0):
+            os.system(f'gsutil cp {url} {save_dir}')  # download evolve.csv if larger than local
+
+    # Log to evolve.csv
+    s = '' if evolve_csv.exists() else (('%20s,' * n % keys).rstrip(',') + '\n')  # add header
+    with open(evolve_csv, 'a') as f:
+        f.write(s + ('%20.5g,' * n % vals).rstrip(',') + '\n')
 
-    with open('evolve.txt', 'a') as f:  # append result
-        f.write(c + b + '\n')
-    x = np.unique(np.loadtxt('evolve.txt', ndmin=2), axis=0)  # load unique rows
-    x = x[np.argsort(-fitness(x))]  # sort
-    np.savetxt('evolve.txt', x, '%10.3g')  # save sort by fitness
+    # Print to screen
+    print(colorstr('evolve: ') + ', '.join(f'{x.strip():>20s}' for x in keys))
+    print(colorstr('evolve: ') + ', '.join(f'{x:20.5g}' for x in vals), end='\n\n\n')
 
     # Save yaml
-    for i, k in enumerate(hyp.keys()):
-        hyp[k] = float(x[0, i + 7])
-    with open(yaml_file, 'w') as f:
-        results = tuple(x[0, :7])
-        c = '%10.4g' * len(results) % results  # results (P, R, [email protected], [email protected]:0.95, val_losses x 3)
-        f.write('# Hyperparameter Evolution Results\n# Generations: %g\n# Metrics: ' % len(x) + c + '\n\n')
+    with open(evolve_yaml, 'w') as f:
+        data = pd.read_csv(evolve_csv)
+        data = data.rename(columns=lambda x: x.strip())  # strip keys
+        i = np.argmax(fitness(data.values[:, :7]))  #
+        f.write(f'# YOLOv5 Hyperparameter Evolution Results\n' +
+                f'# Best generation: {i}\n' +
+                f'# Last generation: {len(data)}\n' +
+                f'# ' + ', '.join(f'{x.strip():>20s}' for x in keys[:7]) + '\n' +
+                f'# ' + ', '.join(f'{x:>20.5g}' for x in data.values[i, :7]) + '\n\n')
         yaml.safe_dump(hyp, f, sort_keys=False)
 
     if bucket:
-        os.system('gsutil cp evolve.txt %s gs://%s' % (yaml_file, bucket))  # upload
+        os.system(f'gsutil cp {evolve_csv} {evolve_yaml} gs://{bucket}')  # upload
 
 
 def apply_classifier(x, model, img, im0):

utils/loggers/__init__.py

@@ -95,9 +95,8 @@ def on_val_end(self):
             files = sorted(self.save_dir.glob('val*.jpg'))
             self.wandb.log({"Validation": [wandb.Image(str(f), caption=f.name) for f in files]})
 
-    def on_fit_epoch_end(self, mloss, results, lr, epoch, best_fitness, fi):
+    def on_fit_epoch_end(self, vals, epoch, best_fitness, fi):
         # Callback runs at the end of each fit (train+val) epoch
-        vals = list(mloss) + list(results) + lr
         x = {k: v for k, v in zip(self.keys, vals)}  # dict
         if self.csv:
             file = self.save_dir / 'results.csv'
@@ -123,7 +122,7 @@ def on_model_save(self, last, epoch, final_epoch, best_fitness, fi):
     def on_train_end(self, last, best, plots, epoch):
         # Callback runs on training end
         if plots:
-            plot_results(dir=self.save_dir)  # save results.png
+            plot_results(file=self.save_dir / 'results.csv')  # save results.png
         files = ['results.png', 'confusion_matrix.png', *[f'{x}_curve.png' for x in ('F1', 'PR', 'P', 'R')]]
         files = [(self.save_dir / f) for f in files if (self.save_dir / f).exists()]  # filter
 

utils/plots.py

@@ -325,30 +325,6 @@ def plot_labels(labels, names=(), save_dir=Path('')):
     plt.close()
 
 
-def plot_evolution(yaml_file='data/hyp.finetune.yaml'):  # from utils.plots import *; plot_evolution()
-    # Plot hyperparameter evolution results in evolve.txt
-    with open(yaml_file) as f:
-        hyp = yaml.safe_load(f)
-    x = np.loadtxt('evolve.txt', ndmin=2)
-    f = fitness(x)
-    # weights = (f - f.min()) ** 2  # for weighted results
-    plt.figure(figsize=(10, 12), tight_layout=True)
-    matplotlib.rc('font', **{'size': 8})
-    for i, (k, v) in enumerate(hyp.items()):
-        y = x[:, i + 7]
-        # mu = (y * weights).sum() / weights.sum()  # best weighted result
-        mu = y[f.argmax()]  # best single result
-        plt.subplot(6, 5, i + 1)
-        plt.scatter(y, f, c=hist2d(y, f, 20), cmap='viridis', alpha=.8, edgecolors='none')
-        plt.plot(mu, f.max(), 'k+', markersize=15)
-        plt.title('%s = %.3g' % (k, mu), fontdict={'size': 9})  # limit to 40 characters
-        if i % 5 != 0:
-            plt.yticks([])
-        print('%15s: %.3g' % (k, mu))
-    plt.savefig('evolve.png', dpi=200)
-    print('\nPlot saved as evolve.png')
-
-
 def profile_idetection(start=0, stop=0, labels=(), save_dir=''):
     # Plot iDetection '*.txt' per-image logs. from utils.plots import *; profile_idetection()
     ax = plt.subplots(2, 4, figsize=(12, 6), tight_layout=True)[1].ravel()
@@ -381,7 +357,31 @@ def profile_idetection(start=0, stop=0, labels=(), save_dir=''):
     plt.savefig(Path(save_dir) / 'idetection_profile.png', dpi=200)
 
 
-def plot_results(file='', dir=''):
+def plot_evolve(evolve_csv=Path('path/to/evolve.csv')):  # from utils.plots import *; plot_evolve()
+    # Plot evolve.csv hyp evolution results
+    data = pd.read_csv(evolve_csv)
+    keys = [x.strip() for x in data.columns]
+    x = data.values
+    f = fitness(x)
+    j = np.argmax(f)  # max fitness index
+    plt.figure(figsize=(10, 12), tight_layout=True)
+    matplotlib.rc('font', **{'size': 8})
+    for i, k in enumerate(keys[7:]):
+        v = x[:, 7 + i]
+        mu = v[j]  # best single result
+        plt.subplot(6, 5, i + 1)
+        plt.scatter(v, f, c=hist2d(v, f, 20), cmap='viridis', alpha=.8, edgecolors='none')
+        plt.plot(mu, f.max(), 'k+', markersize=15)
+        plt.title('%s = %.3g' % (k, mu), fontdict={'size': 9})  # limit to 40 characters
+        if i % 5 != 0:
+            plt.yticks([])
+        print('%15s: %.3g' % (k, mu))
+    f = evolve_csv.with_suffix('.png')  # filename
+    plt.savefig(f, dpi=200)
+    print(f'Saved {f}')
+
+
+def plot_results(file='path/to/results.csv', dir=''):
     # Plot training results.csv. Usage: from utils.plots import *; plot_results('path/to/results.csv')
     save_dir = Path(file).parent if file else Path(dir)
     fig, ax = plt.subplots(2, 5, figsize=(12, 6), tight_layout=True)