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Duncan Berger edited this page Sep 6, 2024 · 8 revisions

LOMA is a Nextflow pipeline designed to comprehensively assess metagenomic samples sequenced using the Oxford Nanopore (long-read) platform.

The pipeline has two primary approaches to analysis:
     1). Read-based taxonomic classification - assign a taxonomic designation to individual sequencing reads.
     2). Metagenome assembly - assemble and perform in silico typing typing of metagenome assembled genomes

Detailed guidance on the installation, usage and function of LOMA can be found in this wiki, using the navigation bar on the right.

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