Genomic Data Retrieval with R

R package providing query functionality to BioMart instances like Ensembl

A bioinformatics tool for analyzing somatic hypermutation

Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembl dataset. Originally developed as part of a Masters in Bioinformatics project @ University of Exeter

Async pythonic interface to Biomart.

Scripts for .bed file genomic region annotation with various tools

Make simple requests to Ensembl BioMart database.

In silico Lab Shiny App Demo Gene Annotation for a List of RefSNP IDs

Shiny app that converts human gene IDs to different types using BioMart data.

R-package: wrapper for {biomaRt} functions

A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)

Transcriptome Analysis of Heat and Drought-Stressed Wheat