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references.bib
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@Article{Love_2014,
doi = {10.1186/s13059-014-0550-8},
url = {https://doi.org/10.1186/s13059-014-0550-8},
year = {2014},
month = {dec},
publisher = {Springer Science and Business Media {LLC}},
volume = {15},
number = {12},
author = {Michael I Love and Wolfgang Huber and Simon Anders},
title = {Moderated estimation of fold change and dispersion for {RNA}-seq data with {DESeq}2},
journal = {Genome Biology},
}
@Article{Parks_2014,
doi = {10.1093/bioinformatics/btu494},
url = {https://doi.org/10.1093/bioinformatics/btu494},
year = {2014},
month = {jul},
publisher = {Oxford University Press ({OUP})},
volume = {30},
number = {21},
pages = {3123--3124},
author = {Donovan H. Parks and Gene W. Tyson and Philip Hugenholtz and Robert G. Beiko},
title = {{STAMP}: statistical analysis of taxonomic and functional profiles},
journal = {Bioinformatics},
}
@Article{Paulson_2013,
doi = {10.1038/nmeth.2658},
url = {https://doi.org/10.1038/nmeth.2658},
year = {2013},
month = {sep},
publisher = {Springer Science and Business Media {LLC}},
volume = {10},
number = {12},
pages = {1200--1202},
author = {Joseph N Paulson and O Colin Stine and H{\a'e}ctor Corrada Bravo and Mihai Pop},
title = {Differential abundance analysis for microbial marker-gene surveys},
journal = {Nature Methods},
}
@Article{Robinson_2009,
doi = {10.1093/bioinformatics/btp616},
url = {https://doi.org/10.1093/bioinformatics/btp616},
year = {2009},
month = {nov},
publisher = {Oxford University Press ({OUP})},
volume = {26},
number = {1},
pages = {139--140},
author = {M. D. Robinson and D. J. McCarthy and G. K. Smyth},
title = {{edgeR}: a Bioconductor package for differential expression analysis of digital gene expression data},
journal = {Bioinformatics},
}
@Article{Segata_2011,
doi = {10.1186/gb-2011-12-6-r60},
url = {https://doi.org/10.1186/gb-2011-12-6-r60},
year = {2011},
publisher = {Springer Science and Business Media {LLC}},
volume = {12},
number = {6},
pages = {R60},
author = {Nicola Segata and Jacques Izard and Levi Waldron and Dirk Gevers and Larisa Miropolsky and Wendy S Garrett and Curtis Huttenhower},
title = {Metagenomic biomarker discovery and explanation},
journal = {Genome Biology},
}