Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[MRG] fix print_results output of compare to print out symmetric matrix #536

Merged
merged 1 commit into from
Aug 23, 2018

Conversation

ctb
Copy link
Contributor

@ctb ctb commented Aug 23, 2018

fixes #535 by moving the print outside the loop, so the upper right side of the matrix gets calculated
before printout.

  • Is it mergeable?
  • make test Did it pass the tests?
  • make coverage Is the new code covered?
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Was a spellchecker run on the source code and documentation after
    changes were made?

@codecov-io
Copy link

Codecov Report

Merging #536 into master will increase coverage by <.01%.
The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #536      +/-   ##
==========================================
+ Coverage   90.75%   90.76%   +<.01%     
==========================================
  Files          33       33              
  Lines        5010     5011       +1     
  Branches       36       36              
==========================================
+ Hits         4547     4548       +1     
  Misses        463      463
Impacted Files Coverage Δ
sourmash/commands.py 91.59% <100%> (+0.01%) ⬆️

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 988459c...54e73e0. Read the comment docs.

@luizirber luizirber merged commit 12aa76f into master Aug 23, 2018
@luizirber luizirber deleted the fix/compare_print branch August 23, 2018 17:16
ctb pushed a commit that referenced this pull request Oct 28, 2022
Updates the requirements on
[pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the
latest version.
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst">pytest-cov's
changelog</a>.</em></p>
<blockquote>
<h2>4.0.0 (2022-09-28)</h2>
<p><strong>Note that this release drops support for
multiprocessing.</strong></p>
<ul>
<li>
<p><code>--cov-fail-under</code> no longer causes <code>pytest
--collect-only</code> to fail
Contributed by Zac Hatfield-Dodds in
<code>[#511](pytest-dev/pytest-cov#511)
&lt;https://github.com/pytest-dev/pytest-cov/pull/511&gt;</code>_.</p>
</li>
<li>
<p>Dropped support for multiprocessing (mostly because <code>issue 82408
&lt;https://github.com/python/cpython/issues/82408&gt;</code>_). This
feature was
mostly working but very broken in certain scenarios and made the test
suite very flaky and slow.</p>
<p>There is builtin multiprocessing support in coverage and you can
migrate to that. All you need is this in your
<code>.coveragerc</code>::</p>
<p>[run]
concurrency = multiprocessing
parallel = true
sigterm = true</p>
</li>
<li>
<p>Fixed deprecation in <code>setup.py</code> by trying to import
setuptools before distutils.
Contributed by Ben Greiner in
<code>[#545](pytest-dev/pytest-cov#545)
&lt;https://github.com/pytest-dev/pytest-cov/pull/545&gt;</code>_.</p>
</li>
<li>
<p>Removed undesirable new lines that were displayed while reporting was
disabled.
Contributed by Delgan in
<code>[#540](pytest-dev/pytest-cov#540)
&lt;https://github.com/pytest-dev/pytest-cov/pull/540&gt;</code>_.</p>
</li>
<li>
<p>Documentation fixes.
Contributed by Andre Brisco in
<code>[#543](pytest-dev/pytest-cov#543)
&lt;https://github.com/pytest-dev/pytest-cov/pull/543&gt;</code>_
and Colin O'Dell in
<code>[#525](pytest-dev/pytest-cov#525)
&lt;https://github.com/pytest-dev/pytest-cov/pull/525&gt;</code>_.</p>
</li>
<li>
<p>Added support for LCOV output format via
<code>--cov-report=lcov</code>. Only works with coverage 6.3+.
Contributed by Christian Fetzer in
<code>[#536](pytest-dev/pytest-cov#536)
&lt;https://github.com/pytest-dev/pytest-cov/issues/536&gt;</code>_.</p>
</li>
<li>
<p>Modernized pytest hook implementation.
Contributed by Bruno Oliveira in
<code>[#549](pytest-dev/pytest-cov#549)
&lt;https://github.com/pytest-dev/pytest-cov/pull/549&gt;</code>_
and Ronny Pfannschmidt in
<code>[#550](pytest-dev/pytest-cov#550)
&lt;https://github.com/pytest-dev/pytest-cov/pull/550&gt;</code>_.</p>
</li>
</ul>
<h2>3.0.0 (2021-10-04)</h2>
<p><strong>Note that this release drops support for Python 2.7 and
Python 3.5.</strong></p>
<ul>
<li>Added support for Python 3.10 and updated various test dependencies.
Contributed by Hugo van Kemenade in
<code>[#500](pytest-dev/pytest-cov#500)
&lt;https://github.com/pytest-dev/pytest-cov/pull/500&gt;</code>_.</li>
<li>Switched from Travis CI to GitHub Actions. Contributed by Hugo van
Kemenade in
<code>[#494](pytest-dev/pytest-cov#494)
&lt;https://github.com/pytest-dev/pytest-cov/pull/494&gt;</code>_ and
<code>[#495](pytest-dev/pytest-cov#495)
&lt;https://github.com/pytest-dev/pytest-cov/pull/495&gt;</code>_.</li>
<li>Add a <code>--cov-reset</code> CLI option.
Contributed by Danilo Šegan in
<code>[#459](pytest-dev/pytest-cov#459)
&lt;https://github.com/pytest-dev/pytest-cov/pull/459&gt;</code>_.</li>
<li>Improved validation of <code>--cov-fail-under</code> CLI option.
Contributed by ... Ronny Pfannschmidt's desire for skark in
<code>[#480](pytest-dev/pytest-cov#480)
&lt;https://github.com/pytest-dev/pytest-cov/pull/480&gt;</code>_.</li>
<li>Dropped Python 2.7 support.</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/28db055bebbf3ee016a2144c8b69dd7b80b48cc5"><code>28db055</code></a>
Bump version: 3.0.0 → 4.0.0</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/57e9354a86f658556fe6f15f07625c4b9a9ddf53"><code>57e9354</code></a>
Really update the changelog.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/56b810b91c9ae15d1462633c6a8a1b522ebf8e65"><code>56b810b</code></a>
Update chagelog.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/f7fced579e36b72b57e14768026467e4c4511a40"><code>f7fced5</code></a>
Add support for LCOV output</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/1211d3134bb74abb7b00c3c2209091aaab440417"><code>1211d31</code></a>
Fix flake8 error</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/b077753f5d9d200815fe500d0ef23e306784e65b"><code>b077753</code></a>
Use modern approach to specify hook options</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/00713b3fec90cb8c98a9e4bfb3212e574c08e67b"><code>00713b3</code></a>
removed incorrect docs on <code>data_file</code>.</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/b3dda36fddd3ca75689bb3645cd320aa8392aaf3"><code>b3dda36</code></a>
Improve workflow with a collecting status check. (<a
href="https://github-redirect.dependabot.com/pytest-dev/pytest-cov/issues/548">#548</a>)</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/218419f665229d61356f1eea3ddc8e18aa21f87c"><code>218419f</code></a>
Prevent undesirable new lines to be displayed when report is
disabled</li>
<li><a
href="https://github.com/pytest-dev/pytest-cov/commit/60b73ec673c60942a3cf052ee8a1fdc442840558"><code>60b73ec</code></a>
migrate build command from distutils to setuptools</li>
<li>Additional commits viewable in <a
href="https://github.com/pytest-dev/pytest-cov/compare/v2.12.0...v4.0.0">compare
view</a></li>
</ul>
</details>
<br />


Dependabot will resolve any conflicts with this PR as long as you don't
alter it yourself. You can also trigger a rebase manually by commenting
`@dependabot rebase`.

[//]: # (dependabot-automerge-start)
[//]: # (dependabot-automerge-end)

---

<details>
<summary>Dependabot commands and options</summary>
<br />

You can trigger Dependabot actions by commenting on this PR:
- `@dependabot rebase` will rebase this PR
- `@dependabot recreate` will recreate this PR, overwriting any edits
that have been made to it
- `@dependabot merge` will merge this PR after your CI passes on it
- `@dependabot squash and merge` will squash and merge this PR after
your CI passes on it
- `@dependabot cancel merge` will cancel a previously requested merge
and block automerging
- `@dependabot reopen` will reopen this PR if it is closed
- `@dependabot close` will close this PR and stop Dependabot recreating
it. You can achieve the same result by closing it manually
- `@dependabot ignore this major version` will close this PR and stop
Dependabot creating any more for this major version (unless you reopen
the PR or upgrade to it yourself)
- `@dependabot ignore this minor version` will close this PR and stop
Dependabot creating any more for this minor version (unless you reopen
the PR or upgrade to it yourself)
- `@dependabot ignore this dependency` will close this PR and stop
Dependabot creating any more for this dependency (unless you reopen the
PR or upgrade to it yourself)


</details>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

sourmash compare is not outputting symmetric matrices any more?
3 participants