fix k=19 => k=57 everywhere else, too

sourmash-bio · Jun 12, 2020 · 59a6fb8 · 59a6fb8
1 parent 20d5cf5
commit 59a6fb8
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Showing 5 changed files with 9 additions and 6 deletions.
diff --git a/tests/test-data/prot/dayhoff.sbt.zip b/tests/test-data/prot/dayhoff.sbt.zip
diff --git a/tests/test-data/prot/hp.sbt.zip b/tests/test-data/prot/hp.sbt.zip
diff --git a/tests/test-data/prot/protein.sbt.zip b/tests/test-data/prot/protein.sbt.zip
diff --git a/tests/test_cmd_signature.py b/tests/test_cmd_signature.py
@@ -793,7 +793,7 @@ def test_sig_describe_protein(c):
     testdata = utils.get_test_data('prot/protein/GCA_001593925.1_ASM159392v1_protein.faa.gz.sig')
     c.run_sourmash('sig', 'describe', testdata)
 
-    assert 'k=19 molecule=protein num=0 scaled=100 seed=42 track_abundance=0' in c.last_result.out
+    assert 'k=57 molecule=protein num=0 scaled=100 seed=42 track_abundance=0' in c.last_result.out
 
 
 @utils.in_thisdir
@@ -802,7 +802,7 @@ def test_sig_describe_hp(c):
     testdata = utils.get_test_data('prot/hp/GCA_001593925.1_ASM159392v1_protein.faa.gz.sig')
     c.run_sourmash('sig', 'describe', testdata)
 
-    assert 'k=19 molecule=hp num=0 scaled=1 seed=42 track_abundance=0' in c.last_result.out
+    assert 'k=57 molecule=hp num=0 scaled=100 seed=42 track_abundance=0' in c.last_result.out
 
 
 @utils.in_thisdir
@@ -811,7 +811,7 @@ def test_sig_describe_dayhoff(c):
     testdata = utils.get_test_data('prot/dayhoff/GCA_001593925.1_ASM159392v1_protein.faa.gz.sig')
     c.run_sourmash('sig', 'describe', testdata)
 
-    assert 'k=19 molecule=dayhoff num=0 scaled=100 seed=42 track_abundance=0' in c.last_result.out
+    assert 'k=57 molecule=dayhoff num=0 scaled=100 seed=42 track_abundance=0' in c.last_result.out
 
 
 @utils.in_tempdir

diff --git a/tests/test_sbt.py b/tests/test_sbt.py
@@ -784,9 +784,10 @@ def test_sbt_protein_command_index(c):
     sigfile2 = utils.get_test_data('prot/protein/GCA_001593935.1_ASM159393v1_protein.faa.gz.sig')
 
     db_out = c.output('protein.sbt.zip')
+    db_out = '/tmp/protein.sbt.zip'
 
     c.run_sourmash('index', db_out, sigfile1, sigfile2,
-                   '--scaled', '100', '-k', '19', '--protein')
+                   '--scaled', '100', '-k', '57', '--protein')
 
     db2 = sourmash.load_sbt_index(db_out)
 
@@ -830,9 +831,10 @@ def test_sbt_hp_command_index(c):
     sigfile2 = utils.get_test_data('prot/hp/GCA_001593935.1_ASM159393v1_protein.faa.gz.sig')
 
     db_out = c.output('hp.sbt.zip')
+    db_out = '/tmp/hp.sbt.zip'
 
     c.run_sourmash('index', db_out, sigfile1, sigfile2,
-                   '--scaled', '1', '-k', '19', '--hp')
+                   '--scaled', '100', '-k', '57', '--hp')
 
     db2 = sourmash.load_sbt_index(db_out)
 
@@ -876,9 +878,10 @@ def test_sbt_dayhoff_command_index(c):
     sigfile2 = utils.get_test_data('prot/dayhoff/GCA_001593935.1_ASM159393v1_protein.faa.gz.sig')
 
     db_out = c.output('dayhoff.sbt.zip')
+    db_out = '/tmp/dayhoff.sbt.zip'
 
     c.run_sourmash('index', db_out, sigfile1, sigfile2,
-                   '--scaled', '100', '-k', '19', '--dayhoff')
+                   '--scaled', '100', '-k', '57', '--dayhoff')
 
     db2 = sourmash.load_sbt_index(db_out)