InstallOmega
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First, install a recent version of napari and check these instructions for the different options. IMPORTANT NOTE: Make sure you have a recent version of napari! Ideally, the latest one!
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Open the Plugins installation/removal dialog in the "Plugins>Install/Uninstall Plugins" menu:
- Install the
napari-chatgptplugin by searching it in the list:
Make sure you have a miniconda installation on your system. Ask ChatGPT what that is all about if you are unsure ;-)
Make sure that your conda installation is up-to-date:
conda deactivate
conda update conda
Create environment:
conda create -y -n napari-chatgpt -c conda-forge python=3.9
Activate environment:
conda activate napari-chatgpt
Install napari in the environment using conda-forge: (very important on Apple M1/M2)
conda install -c conda-forge napari pyqt
Or, with pip (linux, windows, or Intel Macs, not recommended on Apple M1/M2!):
python -m pip install "napari[all]"
Install napari-chatgpt in the environment:
python -m pip install napari-chatgpt
You can now start Omega's plugin within napari directly with this:
napari -w napari-chatgpt
To install the latest development version (not recommended for end-users):
conda create -y -n napari-chatgpt -c conda-forge python=3.9
conda activate napari-chatgpt
python -m pip install "napari[all]"
git clone https://github.com/royerlab/napari-chatgpt.git
cd napari-chatgpt
pip install -e .
pip install -e ".[testing]"
or:
# same steps as above (except last two pip install lines) and then:
pip install git+https://github.com/royerlab/napari-chatgpt.git
On ARM Macs you can also do this to be able to run the tests locally:
pip install tox pytest pytest-cov pytest-qt
On Ubuntu systems, I recommend setting changing the UI timeout, otherwise, whenever Omega is thinking, the UI will freeze, and a popup will block everything which is very annoying:
gsettings set org.gnome.mutter check-alive-timeout 60000
To segment images using CellPose or Stardist from within Omega, we recommend that you install these packages. Instructions on how to do so can be found [here | SegmentationTool].