Prepare Sample Sheet from IRIDA

This repository provides a workflow to prepare a sample sheet from IRIDA. The workflow is designed to be used with Cloudgene.

Overview

• Name: Prepare Sample Sheet from IRIDA
• Version: 1.0.0
• Author: Thanh Le Viet
• Website: GitHub Repository

Workflow

The workflow consists of the following step:

1. Get Sample Sheet from IRIDA: This step retrieves the sample sheet using the script from the quadram-institute-bioinformatics/nf-irida repository at version 1.0.0.

Inputs

• Project ID: A text input representing the project ID(s). Multiple IDs can be separated by commas. Default value is "123456".
• Merge Sample Sheet: A boolean option to merge sample sheets from multiple projects. Default value is false.

Outputs

• Output: The output is stored in a local folder.

Usage

To use this workflow, provide the necessary project ID as input and execute the workflow to generate the sample sheet from IRIDA.

For more details, visit the GitHub Repository.