Skip to content

Issues: pughlab/ConsensusCruncher

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

12 Open 5 Closed
12 Open 5 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

The resulting bam file has improper sample name
#24 opened Nov 23, 2023 by gavin-peng
IndexError: string index out of range
#21 opened Dec 12, 2021 by robinycfang
barcode overlap checking needs to limit overlap from start
#16 opened Feb 28, 2020 by jinfengzou-uhn
name 'overlap' is not defined in extract_barcodes.py
#15 opened Feb 14, 2020 by jinfengzou-uhn
3
Add picard command in the ConsensusCruncher.py
#13 opened Jan 15, 2020 by arnavaz
Bam header RG conflict
#12 opened Jan 15, 2020 by arnavaz
The results output is confusing.
#10 opened Dec 19, 2019 by AdaZED
Overlapping barcodes are not clearly well-defined.
#9 opened Dec 19, 2019 by AdaZED
Import modules instead of shelling out to them
#8 opened Dec 18, 2019 by callunity
Allow this library to be installed via pip
#7 opened Dec 18, 2019 by callunity
Clarify link between genome and bedfile
#6 opened Dec 18, 2019 by callunity
Prefer os.subprocess.call() to os.system()
#5 opened Dec 18, 2019 by callunity
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.