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Owkin

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  1. PyDESeq2 PyDESeq2 Public

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    Python 601 68

  2. FLamby FLamby Public

    Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

    Python 206 25

  3. HistoSSLscaling HistoSSLscaling Public

    Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

    Jupyter Notebook 148 11

  4. HE2RNA_code HE2RNA_code Public archive

    Train a model to predict gene expression from histology slides.

    Python 94 37

  5. GrAIdient GrAIdient Public

    GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

    Swift 84 2

  6. DSB2017 DSB2017 Public archive

    Data Science Bowl 2017 : Lung Cancer Detection

    Python 46 15

Repositories

Showing 10 of 48 repositories
  • cytocommunity_ofta Public Forked from huBioinfo/CytoCommunity

    A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.

    owkin/cytocommunity_ofta’s past year of commit activity
    Jupyter Notebook 0 MIT 12 0 0 Updated Dec 13, 2024
  • PyDESeq2 Public

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    owkin/PyDESeq2’s past year of commit activity
    Python 601 MIT 68 33 5 Updated Dec 12, 2024
  • stLearn Public Forked from BiomedicalMachineLearning/stLearn

    A novel machine learning pipeline to analyse spatial transcriptomics data

    owkin/stLearn’s past year of commit activity
    Python 0 27 0 0 Updated Dec 12, 2024
  • fedpydeseq2-paper-experiments Public
    owkin/fedpydeseq2-paper-experiments’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 10, 2024
  • fedpydeseq2 Public

    A federated implementation of PyDESeq2, based on Substra.

    owkin/fedpydeseq2’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Dec 10, 2024
  • fedpydeseq2-datasets Public
    owkin/fedpydeseq2-datasets’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 10, 2024
  • docker-dependency-updater Public

    Checks system dependencies and update them if required

    owkin/docker-dependency-updater’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 5 Updated Dec 9, 2024
  • HE2TEAD Public
    owkin/HE2TEAD’s past year of commit activity
    Python 0 0 0 0 Updated Nov 26, 2024
  • fedeca Public

    Code repository associated with the FedECA article

    owkin/fedeca’s past year of commit activity
    Python 7 2 8 (5 issues need help) 0 Updated Nov 19, 2024
  • geosketch Public Forked from brianhie/geosketch

    Geometry-preserving random sampling

    owkin/geosketch’s past year of commit activity
    Python 0 MIT 11 0 0 Updated Oct 29, 2024
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