Repositories list

• cumulus-etl

  Public
  Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

  nlpbioinformaticsfhir+ 1bdf-toolbox

  Python

  •

  Apache License 2.0

  •2•11•16•1•Updated Jan 15, 2025Jan 15, 2025

• cumulus-library-data-metrics

  Public
  A data metrics study for the Cumulus project

  Jinja

  •

  Apache License 2.0

  •0•2•12•1•Updated Jan 15, 2025Jan 15, 2025

• cumulus-library-umls

  Public
  A Unified Medical Language System® Metathesaurus study for the Cumulus project

  bdf-toolbox

  Python

  •0•0•3•0•Updated Jan 14, 2025Jan 14, 2025

• cumulus-library

  Public
  bioinformaticsfhirbdf-toolbox

  Python

  •

  Apache License 2.0

  •0•2•39•3•Updated Jan 13, 2025Jan 13, 2025

• bulk-data-client

  Public
  JavaScript

  •

  Apache License 2.0

  •8•12•3•0•Updated Jan 13, 2025Jan 13, 2025

• cumulus-fhir-support

  Public
  FHIR support code for the Cumulus project

  bioinformaticsfhir

  Python

  •

  Apache License 2.0

  •0•1•1•1•Updated Jan 13, 2025Jan 13, 2025

• bulk-data-server

  Public
  TypeScript

  •

  Other

  •15•48•3•3•Updated Jan 10, 2025Jan 10, 2025

• cumulus-library-rxnorm

  Public
  bdf-toolbox

  Python

  •0•0•1•0•Updated Jan 9, 2025Jan 9, 2025

• cumulus-aggregator

  Public
  Python

  •

  Apache License 2.0

  •0•2•17•0•Updated Jan 7, 2025Jan 7, 2025

• cumulus-aggregator-test-study

  Public
  Test data for aggregator git fetching

  0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• cumulus

  Public
  Clinical investigation at population scale.

  Shell

  •

  Apache License 2.0

  •0•5•1•0•Updated Dec 26, 2024Dec 26, 2024

• chart-review

  Public
  Measure agreement between chart reviewers.

  bioinformaticslabel-studio

  Python

  •

  Apache License 2.0

  •1•5•9•0•Updated Dec 2, 2024Dec 2, 2024

• client-py

  Public
  Python SMART on FHIR client

  fhirsmart-on-fhirfhir-client+ 1fhir-parser

  Python

  •

  Other

  •213•603•23•0•Updated Dec 2, 2024Dec 2, 2024

• cumulus-library-suicidality-icd10

  Public
  Validation of ICD-10 code usage of Suicidality Cases Compared to Patient Chart Review

  Python

  •

  Apache License 2.0

  •0•0•4•0•Updated Nov 22, 2024Nov 22, 2024

• cumulus-library-suicidality-los

  Public
  Study the increase in pediatric patients presenting to the emergency department with suicidality before and during the COVID-19 pandemic, and the subsequent impact on emergency department length of stay and boarding

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• cumulus-library-template

  Public
  0•0•2•0•Updated Nov 19, 2024Nov 19, 2024

• cumulus-library-opioid

  Public
  Opioid overdose, a SMART-Cumulus study

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• fhir-crawler

  Public
  Utility to download resources from a FHIR server

  TypeScript

  •

  Apache License 2.0

  •2•4•0•0•Updated Oct 9, 2024Oct 9, 2024

• infectious-symptoms-llm-study

  Public
  Detecting Infectious Respiratory Disease Symptoms using LLMs

  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Oct 2, 2024Oct 2, 2024

• patient-browser

  Public
  JavaScript

  •68•86•6•12•Updated Sep 26, 2024Sep 26, 2024

• health-cards-tests

  Public
  Demo for health wallet with Verifiable Credentials and Decentralized Identifiers

  TypeScript

  •

  MIT License

  •31•43•3•8•Updated Sep 10, 2024Sep 10, 2024

• bulk-match-client

  Public
  A Node client for making bulk matching requests against FHIR servers

  TypeScript

  •

  Apache License 2.0

  •0•1•0•0•Updated Sep 6, 2024Sep 6, 2024

• bulk-match-provider

  Public
  Bulk Match Provider

  TypeScript

  •

  Apache License 2.0

  •0•2•0•0•Updated Sep 6, 2024Sep 6, 2024

• client-js

  Public
  JavaScript client for FHIR

  TypeScript

  •

  Other

  •224•302•22•4•Updated Sep 5, 2024Sep 5, 2024

• smart-launcher-v2

  Public
  SMART Launcher

  TypeScript

  •

  Apache License 2.0

  •19•18•2•3•Updated Aug 22, 2024Aug 22, 2024

• cumulus-library-covid

  Public
  Python

  •

  Apache License 2.0

  •0•0•5•0•Updated Aug 22, 2024Aug 22, 2024

• cumulus-library-hypertension

  Public
  Hypertension case definition to support CDC chronic disease management and CMS measures

  Python

  •

  Apache License 2.0

  •0•1•8•0•Updated Aug 21, 2024Aug 21, 2024

• bulk-import-consumer

  Public
  Bulk Data Import Server (Data Consumer)

  JavaScript

  •

  Apache License 2.0

  •0•1•0•0•Updated Aug 12, 2024Aug 12, 2024

• smart-on-fhir.github.io

  Public
  SMART on FHIR Docs

  Jupyter Notebook

  •

  Other

  •88•84•23•11•Updated Aug 5, 2024Aug 5, 2024

• fhir-parser

  Public
  A Python FHIR specification parser and class generator

  Python

  •

  Other

  •70•166•5•0•Updated Jul 22, 2024Jul 22, 2024