Repositories list

• bycon

  Public
  Bycon - A Python Based Beacon API (beacon-project.io) implementation leveraging the Progenetix (progenetix.org) data model

  Python

  •

  Creative Commons Zero v1.0 Universal

  •8•5•0•4•Updated Dec 13, 2024Dec 13, 2024

• beaconplus-web

  Public
  Web frontend for the bycon implementation of the Beacon v2 API

  genomicsbeaconga4gh+ 2cnvprogenetix

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •3•0•0•0•Updated Dec 9, 2024Dec 9, 2024

• progenetix-web

  Public
  Web frontend for the Progenetix cancer genome resource

  reactpythongenomics+ 1cancer

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •3•3•0•0•Updated Dec 9, 2024Dec 9, 2024

• cancercelllines-web

  Public
  Web frontend for the Cancercelllines genome resource - a Progenetix project

  JavaScript

  •3•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• pgxRpi

  Public
  R

  •0•3•0•0•Updated Oct 31, 2024Oct 31, 2024

• byconaut

  Public
  Scripts for genomic data manipulation based on the bycon package

  Python

  •

  Other

  •1•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• refcnv-web

  Public
  Website code for the refCNV resource

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• pgxConnections

  Public
  A simple plot cgi for visualizing connections, e.g. between collaborators (Circos inspired)

  Perl

  •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

• pgxMaps

  Public
  Some Perlish data to map projections

  Perl

  •

  The Unlicense

  •0•0•0•0•Updated Dec 21, 2023Dec 21, 2023

• byconeer

  Public
  Applications and utilities for (Progenetix) data import, access & processing - extensions to `bycon`

  Python

  •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

• PGX

  Public
  Genome profile visualisation for arrayMap and Progenetix

  Perl

  •0•0•0•0•Updated May 17, 2023May 17, 2023

• schemas-legacy

  Public archive
  data schemas for the Progenetix databases

  0•0•0•0•Updated Aug 29, 2022Aug 29, 2022

• BeaconPlus-legacy

  Public archive
  beaconplus v1.n server libraries (to be replaced by bycon)

  Perl

  •0•0•0•0•Updated Aug 29, 2022Aug 29, 2022

• oncopubs

  Public
  Submission repository for articles to be included in the Progenetix publication collection of cancer genome profiling studies

  0•0•1•0•Updated May 20, 2022May 20, 2022

• progenetix.github.io-legacy

  Public archive
  info.progenetix.org website

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •2•0•0•0•Updated May 6, 2022May 6, 2022

• publications

  Public
  HTML

  •1•0•1•0•Updated Dec 27, 2021Dec 27, 2021

• publication-schema

  Public
  Python

  •0•0•0•0•Updated Oct 20, 2021Oct 20, 2021

• progenetix-site-template

  Public template
  Templates & guides for Jekyll based websites

  HTML

  •1•0•0•0•Updated Oct 7, 2021Oct 7, 2021

• ICDOntologies

  Public
  ICDOntologies repository provides mappings for combinations of ICD-O 3 Morphology and Topography codes to NCIt neoplasm core classes.

  ontologiesontology-servicesncit+ 2icd-oprogenetix

  Python

  •0•0•3•0•Updated Nov 26, 2020Nov 26, 2020

• icdot2uberon

  Public
  The icdot2uberon project provides mappings between ICD-O disease loci and UBERON anatomical structures

  uberoncurationicd+ 2ontology-systemsuberon-ontology

  Python

  •0•2•0•0•Updated Sep 30, 2020Sep 30, 2020

• beaconplus-ui

  Public archive
  Beacon+ - Interface for the Beacon+ Server (replaced in progenetix-next for bycon / Beacon+ v2.n)

  genomicsapi-service

  JavaScript

  •0•0•1•0•Updated Jun 29, 2020Jun 29, 2020

• beaconplus-server

  Public archive
  server cgi for Beacon+ development

  Perl

  •0•0•0•0•Updated May 25, 2020May 25, 2020

• PGXDB

  Public archive
  Perl module for arrayMap and Progenetix resource updates

  Perl

  •0•0•0•0•Updated Jul 31, 2019Jul 31, 2019

• arraymap2ga4gh

  Public archive
  Schema examples

  2•2•2•0•Updated Oct 16, 2017Oct 16, 2017