NAVis

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17 repositories

navis
Public
Python library for analysis of neuroanatomical data.
visualization python blender neuroscience transform segmentation neurons swc volumes skeletons
Python
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GNU General Public License v3.0
•33•83•35•15•Updated Dec 15, 2024Dec 15, 2024
navis-flybrains
Public
Transforms for navis that enable mapping between different Drosophila template brains.
templates drosophila vnc mirroring brain registrations navis transforms bridging
Jupyter Notebook
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GNU General Public License v3.0
•2•8•6•1•Updated Dec 10, 2024Dec 10, 2024
neuropython2024
Public
Documentation and Material for the 2024 NeuroPython Workshop
Jupyter Notebook
•1•1•0•0•Updated Sep 24, 2024Sep 24, 2024
octarine-navis-plugin
Public
Octarine plugin to visualize navis objects
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Sep 22, 2024Sep 22, 2024
fastcore
Public
[WIP] Fast core functions for navis re-implemented in Cython.
similarity connectivity vertex connectome
Jupyter Notebook
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GNU General Public License v3.0
•2•1•3•1•Updated Sep 16, 2024Sep 16, 2024
pymaid
Public
Python library to interface with CATMAID servers. Fully interoperable with navis.
blender3d neuron anatomy catmaid nblast python
Python
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GNU General Public License v3.0
•11•23•36•3•Updated Aug 30, 2024Aug 30, 2024
skeletor
Public
Extraction of 3D skeletons from meshes.
skeleton neurons volumes connectomics meshes 3d skeletonization teasar skeleton-extraction skeletonize
Python
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GNU General Public License v3.0
•26•212•30•1•Updated Aug 28, 2024Aug 28, 2024
fafbseg-py
Public
Tools to work with the FlyWire connectome. Fully interoperable with navis.
google annotation cave segmentation brain fly connectome navis synapses flywire
Python
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GNU General Public License v3.0
•5•13•4•2•Updated Aug 13, 2024Aug 13, 2024
navis-mousebrains
Public
Template brains and transforms for mouse brains
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jun 12, 2024Jun 12, 2024
sparse-cubes
Public
Marching cubes for sparse matrices
voxel cubes mesh sparse meshing neurons marching
Python
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GNU General Public License v3.0
•1•4•1•0•Updated May 23, 2023May 23, 2023
.github
Public
0•1•0•0•Updated Apr 6, 2023Apr 6, 2023
connectomes
Public
[WIP] Unified interface to various backends used for hosting connectomes in the cloud.
Python
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GNU General Public License v3.0
•1•6•3•3•Updated Oct 7, 2022Oct 7, 2022
navis-pipelines
Public
Run navis pipelines described by YAML files.
GNU General Public License v3.0
•0•1•0•0•Updated Sep 2, 2022Sep 2, 2022
navis-nblast-gpu
Public
NBLAST running on the GPU using PyTorch [WIP]
Python
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GNU General Public License v3.0
•0•1•0•0•Updated Jul 31, 2022Jul 31, 2022
navis-nblast-large
Public
Implementation of NBLAST for large datasets
neurons large-scale nblast
Python
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GNU General Public License v3.0
•0•0•0•0•Updated May 23, 2022May 23, 2022
pymaid_template
Public
A starter kit for people using python-catmaid for neuronal analysis
Python
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The Unlicense
•0•0•0•0•Updated Feb 21, 2022Feb 21, 2022
navis-nsim
Public
Interface between navis and the NEURON simulator
GNU General Public License v3.0
•0•0•0•0•Updated Sep 20, 2021Sep 20, 2021