navis-mousebrains

Transforms and meta data to map between different mouse template brains. This package is intended to be used with navis and is analogous to navis-flybrains.

Currently mousebrains ships with:

• meta data and surface meshes the Allen CCF mouse brain template

Installation

You can install mousebrains from PyPI:

pip3 install mousebrains

To install the dev version from Github:

pip3 install git+https://github.com/navis-org/navis-mousebrains.git

External dependencies

In order to use CMTK-based transforms, you will need to have CMTK installed.

For the Elastix-based transforms, you will need to download elastix and make sure that the path to the binaries is in your PATH variable.

Usage

TODO

Changes

TODO

Acknowledgements

TODO

Citing

TODO

When in doubt, feel free to open an issue to ask for advice.