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    28 repositories

    • he-class-pipeline

      Public
      MATLAB
      •
      MIT License
      •0•2•6•0•Updated Dec 10, 2024Dec 10, 2024

    • SOPRANO

      Public
      SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions
      Python
      •
      GNU General Public License v3.0
      •0•3•12•0•Updated Nov 27, 2024Nov 27, 2024

    • .github

      Public
      0•0•0•0•Updated May 3, 2024May 3, 2024

    • ProtoMS

      Public
      ProtoMS is a program to setup, run and analyse Monte Carlo simulations of organic and biomolecular systems.
      Fortran
      •
      Other
      •4•1•0•0•Updated Feb 6, 2024Feb 6, 2024

    • intro-to-python

      Public archive
      Jupyter Notebook
      •1•4•0•0•Updated Jan 15, 2024Jan 15, 2024

    • pisca-box

      Public
      A containerised web application for pisca-beast
      Python
      •
      MIT License
      •0•2•5•0•Updated Jan 5, 2024Jan 5, 2024

    • CCR4157

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Dec 7, 2023Dec 7, 2023

    • test-doi

      Public
      This is a public site that shows creating a doi for an institution repo via zenodo
      MIT License
      •0•0•0•0•Updated Sep 8, 2023Sep 8, 2023

    • cansar-ddn

      Public
      Perl
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Sep 8, 2023Sep 8, 2023

    • cansar-cta

      Public
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • synchro

      Public
      Customisable file transfers using rsync
      Python
      •
      MIT License
      •1•2•8•0•Updated Jul 6, 2023Jul 6, 2023

    • python-training

      Public
      Python training at the Institute of Cancer Research
      Creative Commons Attribution 4.0 International
      •3•2•0•0•Updated Apr 13, 2022Apr 13, 2022

    • slidebook-python

      Public archive
      Open slidebook .sldy files in Python
      Python
      •
      MIT License
      •1•2•7•0•Updated Apr 6, 2022Apr 6, 2022

    • LightMicroscopy_ICR_Web

      Public
      Light Microscopy and Image Analysis at ICR
      0•0•0•0•Updated Mar 10, 2022Mar 10, 2022

    • python-cookiecutter

      Public
      Utility to create a basic Python project structure with tests, CI etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Feb 24, 2022Feb 24, 2022

    • napari-sldy

      Public archive
      Load slidebook .sldy files into napari
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 15, 2022Feb 15, 2022

    • python-icr-dl

      Public
      Jupyter Notebook
      •1•1•3•0•Updated Jan 25, 2022Jan 25, 2022

    • foci-timelapse

      Public
      Measure foci dynamics
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • CalciumAnalysis

      Public
      Simple analysis of calcium dynamics in 2D images.
      MATLAB
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • foci-colocalisation

      Public
      Measure colocalisation of two types of foci per cell.
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • cell-coloc-3D

      Public
      Measure distribution of a marker per cell, per object (manually segmented)
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • foci2D

      Public
      Assess foci in 2D images on a per cell basis (using nuclear marker)
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • relativeTrack

      Public
      Track one class of objects relative to another.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • coloc-3DT

      Public
      Measure intensity of one marker in another.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated May 22, 2019May 22, 2019

    • intro-image-analysis

      Public
      ICR Image Analysis Course
      CSS
      •1•0•0•0•Updated Oct 16, 2018Oct 16, 2018

    • LSFM_Python_tools

      Public
      General python image processing
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • FIJI_ICR

      Public
      Assorted FIJI macros and scripts
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 2, 2018Aug 2, 2018

    • man-seg-analysis

      Public
      Analyses objects following manual segmentation (e.g. EM)
      MATLAB
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Apr 19, 2018Apr 19, 2018