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    160 repositories

    • cytoscape.js

      Public
      Graph theory (network) library for visualisation and analysis
      networkcytoscapejsjavascriptanalysisvisualisationgraph-theory
      JavaScript
      •
      MIT License
      •1.6k•10k•12•3•Updated Dec 17, 2024Dec 17, 2024

    • cytoscape-web

      Public
      TypeScript
      •
      MIT License
      •7•6•1•3•Updated Dec 17, 2024Dec 17, 2024

    • network-ptm-integration

      Public
      This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).
      R
      •
      MIT License
      •0•0•3•0•Updated Dec 9, 2024Dec 9, 2024

    • cx

      Public
      CX serialization and de-serialization in Cytoscape
      Java
      •1•2•8•1•Updated Dec 9, 2024Dec 9, 2024

    • iregulon-webapp

      Public
      JavaScript
      •
      MIT License
      •0•1•15•0•Updated Dec 9, 2024Dec 9, 2024

    • cytoscape-impl

      Public
      Cytoscape 3 implementation bundles.
      Java
      •
      GNU Lesser General Public License v2.1
      •42•36•0•0•Updated Dec 5, 2024Dec 5, 2024

    • cytoscape-manual

      Public
      Markdown version of Cytoscape manual
      Creative Commons Zero v1.0 Universal
      •23•11•0•0•Updated Dec 5, 2024Dec 5, 2024

    • web-cytoscape-manual

      Public
      Holds documentation for Cytoscape Web
      Makefile
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

    • cytoscape-admin-scripts

      Public
      Build and maintenance scripts for Cytoscape core developers.
      Jupyter Notebook
      •5•2•1•0•Updated Dec 4, 2024Dec 4, 2024

    • cytoscape-pmcfigurebot

      Public
      Query figures indexed by PubMed Central and collect metadata
      R
      •
      Creative Commons Zero v1.0 Universal
      •4•1•0•0•Updated Dec 1, 2024Dec 1, 2024

    • cytoscape-web-app-examples

      Public
      (Experimental) Example apps for Cytoscape Web
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • cytoscape.js-elk

      Public
      The ELK layout algorithm adapter for Cytoscape.js
      JavaScript
      •
      MIT License
      •27•45•0•0•Updated Nov 26, 2024Nov 26, 2024

    • cytoscape.js-dagre

      Public
      The Dagre layout for DAGs and trees for Cytoscape.js
      cytoscapejscytoscapejs-extension
      JavaScript
      •
      MIT License
      •82•255•1•0•Updated Nov 22, 2024Nov 22, 2024

    • cytoscape.js-cxtmenu

      Public
      Context menu for Cytoscape.js
      cytoscapejscytoscapejs-extension
      JavaScript
      •
      MIT License
      •83•167•1•0•Updated Nov 22, 2024Nov 22, 2024

    • cytoscape.js-cola

      Public
      The Cola.js physics simulation layout for Cytoscape.js
      cytoscapejscytoscapejs-extension
      JavaScript
      •
      MIT License
      •67•151•0•1•Updated Nov 22, 2024Nov 22, 2024

    • cytoscape.github.com

      Public
      Cytoscape org web site.
      HTML
      •16•22•1•0•Updated Nov 21, 2024Nov 21, 2024

    • cytoscape-home

      Public
      JavaScript
      •
      MIT License
      •1•1•5•0•Updated Nov 21, 2024Nov 21, 2024

    • cytoscape-support

      Public
      Cytoscape 3 support bundles.
      Java
      •5•0•0•1•Updated Nov 18, 2024Nov 18, 2024

    • cytoscape-parent

      Public
      Cytoscape 3.x parent pom file.
      5•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • cytoscape-gui-distribution

      Public
      Cytoscape 3 desktop version.
      Java
      •18•17•0•3•Updated Nov 18, 2024Nov 18, 2024

    • cytoscape

      Public
      Cytoscape: an open source platform for network analysis and visualization
      Shell
      •139•586•0•1•Updated Nov 18, 2024Nov 18, 2024

    • cytoscape-app-template

      Public
      Cytoscape 3 project files for App developers.
      4•1•0•0•Updated Nov 18, 2024Nov 18, 2024

    • cytoscape-api

      Public
      Cytoscape 3 API bundles.
      Java
      •
      GNU Lesser General Public License v2.1
      •34•22•0•0•Updated Nov 18, 2024Nov 18, 2024

    • py4cytoscape

      Public
      Python library for calling Cytoscape Automation via CyREST
      workflowworkflow-automationpythoncytoscapepy2cytoscapecytoscape-interfaces
      Python
      •
      Other
      •15•72•25•1•Updated Nov 14, 2024Nov 14, 2024

    • cytoscape.js-klay

      Public
      The Klay layout algorithm for Cytoscape.js
      JavaScript
      •
      MIT License
      •41•88•0•1•Updated Nov 14, 2024Nov 14, 2024

    • cytoscape.js-pdf-export

      Public
      PDF export extension for Cytoscape.js
      JavaScript
      •
      MIT License
      •0•0•2•0•Updated Nov 7, 2024Nov 7, 2024

    • cytoscape-tutorials

      Public
      Collection of modular Cytoscape tutorials for online presentation using reveal.js
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •118•315•26•13•Updated Nov 7, 2024Nov 7, 2024

    • RCy3

      Public
      New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
      R
      •
      MIT License
      •20•52•7•0•Updated Oct 30, 2024Oct 30, 2024

    • cytoscape.js-popper

      Public
      A wrapper for Popper.js that lets you position divs relative to Cytoscape elements
      JavaScript
      •
      MIT License
      •23•98•0•2•Updated Oct 30, 2024Oct 30, 2024

    • js4cytoscape

      Public
      JavaScript library for calling Cytoscape Automation via CyREST
      JavaScript
      •
      MIT License
      •4•3•1•0•Updated Oct 29, 2024Oct 29, 2024