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    16 repositories

    • d3-map-dashboard

      Public
      TypeScript
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • lightning-sandbox

      Public
      Skeleton for deep learning project using pytorch lightning
      Python
      •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

    • cannon-notes

      Public
      Notes, etc. for various resources/workflows on FASRC Cannon
      WDL
      •
      MIT License
      •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • civet

      Public
      COPD Integrated Visualization and Exploration Tool
      Python
      •
      MIT License
      •0•0•0•1•Updated Feb 29, 2024Feb 29, 2024

    • gosling-demo

      Public
      HTML
      •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • vitessce-demo

      Public
      JavaScript
      •0•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • target-pipeline

      Public
      Basic nextflow pipeline for processing RNA-seq data from TARGET-NBL cohort
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2023Sep 22, 2023

    • JupyteRStudioHub

      Public
      A terraform plan and scripts for creating a GCP-based server with JupyterLab and RStudio
      Shell
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

    • seahorse-backend

      Public
      HCL
      •
      MIT License
      •1•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • nextflow-scripts

      Public
      Various nextflow scripts for internal use
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 9, 2023Mar 9, 2023

    • batchflow

      Public
      Terraform plan to create AWS Batch environment
      HCL
      •
      MIT License
      •0•0•0•0•Updated Mar 9, 2023Mar 9, 2023

    • icarus

      Public
      A federated data warehouse platform for the sharing of COVID-19 related information amongst a consortium of higher education institutions.
      R
      •
      MIT License
      •0•0•0•0•Updated Jan 24, 2023Jan 24, 2023

    • rstudio-terraform

      Public
      Terraform plan for creating a RStudio server on a GCP instance
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 3, 2022May 3, 2022

    • TNSeq-Course-Summer-2021

      Public
      TNSeq analysis materials for the Summer 2021 course
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 22, 2021Jul 22, 2021

    • jupyterhub-terraform

      Public
      A terraform plan and helper scripts to spin up a JupyterHub instance on GCP
      Shell
      •1•0•0•0•Updated Jul 13, 2021Jul 13, 2021

    • cromwell-terraform

      Public
      Terraform-based plan for orchestrating a Cromwell server on GCP
      HCL
      •0•0•0•0•Updated May 26, 2021May 26, 2021