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non-symmetric matrix support in pairix loader #171

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nvictus opened this issue Jun 20, 2019 · 3 comments
Open

non-symmetric matrix support in pairix loader #171

nvictus opened this issue Jun 20, 2019 · 3 comments

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@nvictus
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nvictus commented Jun 20, 2019

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@taskina-alena
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Hi! What should I do to create non-symmetric cool matrix? I found out that cooler cload pairs has -N parameter. However, how to join two matrix after that?

@agalitsyna
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agalitsyna commented May 26, 2021

Hi, Alena @taskina-alena,
cooler cload creates a single matrix when run with -N parameter. Here is an example:
cooler cload pairs --no-symmetric-upper genomic_bins.bed pairs.tsv output.cool
However, I'm not sure I got your question right

@taskina-alena
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Thanks! I figured it out

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