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@open2c

Open Chromosome Collective

README.md

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  1. cooler cooler Public

    A cool place to store your Hi-C

    Python 209 51

  2. cooltools cooltools Public

    The tools for your .cool's

    Jupyter Notebook 142 51

  3. pairtools pairtools Public

    Extract 3D contacts (.pairs) from sequencing alignments

    Python 104 32

  4. bioframe bioframe Public

    Genomic interval operations on Pandas DataFrames

    Python 175 29

  5. distiller-nf distiller-nf Public

    A modular Hi-C mapping pipeline

    Groovy 87 25

  6. polychrom polychrom Public

    Chromosome polymer simulations and in silico capture experiments

    Python 47 16

Repositories

Showing 10 of 28 repositories
  • polychrom-hoomd Public
    open2c/polychrom-hoomd’s past year of commit activity
    Python 7 MIT 4 0 0 Updated Dec 16, 2024
  • cooler Public

    A cool place to store your Hi-C

    open2c/cooler’s past year of commit activity
    Python 209 BSD-3-Clause 51 32 (1 issue needs help) 4 Updated Dec 16, 2024
  • bioframe Public

    Genomic interval operations on Pandas DataFrames

    open2c/bioframe’s past year of commit activity
    Python 175 MIT 29 28 2 Updated Dec 16, 2024
  • pairtools Public

    Extract 3D contacts (.pairs) from sequencing alignments

    open2c/pairtools’s past year of commit activity
    Python 104 MIT 32 40 (2 issues need help) 5 Updated Dec 11, 2024
  • distiller-nf Public

    A modular Hi-C mapping pipeline

    open2c/distiller-nf’s past year of commit activity
    Groovy 87 MIT 25 63 (2 issues need help) 3 Updated Dec 5, 2024
  • .github Public
    open2c/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 7, 2024
  • coolpuppy Public

    A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

    open2c/coolpuppy’s past year of commit activity
    Python 78 MIT 12 8 0 Updated Oct 31, 2024
  • cooltools Public

    The tools for your .cool's

    open2c/cooltools’s past year of commit activity
    Jupyter Notebook 142 MIT 51 62 8 Updated Oct 21, 2024
  • distiller-sm Public

    a Snakemake version of distiller - the Open2C Hi-C mapping workflow

    open2c/distiller-sm’s past year of commit activity
    Python 4 MIT 3 8 0 Updated Oct 11, 2024
  • open2c.github.io Public

    Welcome to the Open Chromosome Collective!

    open2c/open2c.github.io’s past year of commit activity
    Ruby 2 2 0 0 Updated Sep 26, 2024
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