Script for calculating min/max #103
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Script which calculates the min/max for a given number of images and resets the StatsInfo if so directed.
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For performance, It might be actually better to calculate the rendering settings for the default plane (z =SizeZ/2, t=0) |
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Is it useful to allow either/or? |
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Both will be useful. |
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Thoughts on the argument name and the default "off" or "on"? |
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Another option to speed things up: randomly pick |
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The "shared" rendering settings will require some major adjustments in the way we use them to generate thumbnails or display images. |
Hadn't thought about having anything shared. I'll probably leave that for further efforts. |
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joshmoore@ccabe32 is a start on "default" and "random". |
Add options under the 'Choice' argument to reduce the processing overhead. Note: this does not yet search for random tiles across *all* images but rather per image
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Going back to the script, I am now wondering if we should not "run" it when calculating the min/max during the rendering steps |
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Note: @emilroz had also started working on a version for big images while this is for HCS images. I haven't found time to unify yet. |
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Could such option be part of |
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Certainly, that would match the strategy we've used with populate metadata as well: cc: @sbesson |
| """ | ||
| Process the script params to make a list of channel_offsets, then iterate | ||
| through the images creating a new image from each with the specified | ||
| channel offsets |
| pixels = oldImage.getPrimaryPixels() | ||
| rv = dict() | ||
| dt = pixels.getTile(0, 0, 0, (0, 0, 16, 16)).dtype | ||
| tile_min = iinfo(dt).max # Everything is less |
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Note: this fails for floating point data types.
| statsInfos.update(x) | ||
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| if debug: | ||
| print "Loaded %s tile(s) (%s bytes)" % (tile_count, byte_count) |
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This one and other similar print statements error in my hands. Is it because of the python3 environment I am using ?
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Yes, just use print() like
print("Loaded %s tile(s) (%s bytes)" % (tile_count, byte_count))
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--exclude |
After importing with
--skip=allthe rendering settings for an image can be quite unattractive. If the range is large, finding a good setting manually can be problematic. This calculates the min/max perChanneland optionally creates or updates theStatsInfofor eachChannel.cc: @manics @jburel @will-moore @sbesson