Use bioconda for snakemake related packages only #5
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Previously, with the full range of packages available from bioconda, conda-forge and default channels, micromamba failed to solve the environment specification.
tomalrussell
approved these changes
Apr 22, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Previously, with the full range of packages available from
bioconda,conda-forgeanddefaultchannels,micromambafailed to solve the environment specification. Removingbiocondafrom the channels list (and including it in the relevant per-dependency listings) enables a solve. Note that retainingbiocondain the channels list, but dropping its ranking to belowconda-forgealso enabled a successful solve. Note that packages are duplicated between the channels.Addresses #4.