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NIRFAST is a free and open source FEM-based matlab package for modeling near infrared (NIR) frequency domain light transport in tissue. The types of problems include:
- Standard single wavelength absorption and reduced scatter
- Multi-wavelength spectrally constrained models
- Fluorescence models
- google code wiki pages: https://code.google.com/archive/p/nirfast/wikis
- guideline/tutorial : https://docs.google.com/document/d/1AOL9FAzRnJcWIWYtPjxbHGixDjaL4h-DEQrpJSgu7Vw/edit#heading=h.y6b9wz5ar4ox
- video tutorial : https://www.youtube.com/playlist?list=PLKByCD4mZJgqC12K4brmeQCexi_GHb-YI
Please reference these if you use Nirfast for a publication:
M. Jermyn, H. Ghadyani, M.A. Mastanduno, W. Turner, S.C. Davis, H. Dehghani, and B.W. Pogue, "Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography," J. Biomed. Opt. 18 (8), 086007 (August 12, 2013), doi: 10.1117/1.JBO.18.8.086007.
H. Dehghani, M.E. Eames, P.K. Yalavarthy, S.C. Davis, S. Srinivasan, C.M. Carpenter, B.W. Pogue, and K.D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Communications in Numerical Methods in Engineering, vol. 25, 2009, pp. 711-732.