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## NIRFAST:
Copyright (c) 2003, Dartmouth College NIRFAST Group
All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
* Neither the name of the Dartmouth College nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
## TRIANGLE:
Jonathan Richard Shewchuk, Triangle: Engineering a 2D Quality Mesh Generator and Delaunay Triangulator, in ``Applied Computational Geometry: Towards Geometric Engineering'' (Ming C. Lin and Dinesh Manocha, editors), volume 1148 of Lecture Notes in Computer Science, pages 203-222, Springer-Verlag, Berlin, May 1996.
http://www.cs.cmu.edu/~quake/triangle.html
## TETGEN:
TetGen License
--------------
The software (TetGen) is licensed under the terms of the MIT license
with the following exceptions:
Distribution of modified versions of this code is permissible UNDER
THE CONDITION THAT THIS CODE AND ANY MODIFICATIONS MADE TO IT IN THE
SAME SOURCE FILES tetgen.h AND tetgen.cxx REMAIN UNDER COPYRIGHT OF
THE ORIGINAL AUTHOR, BOTH SOURCE AND OBJECT CODE ARE MADE FREELY
AVAILABLE WITHOUT CHARGE, AND CLEAR NOTICE IS GIVEN OF THE
MODIFICATIONS.
Distribution of this code for any commercial purpose is permissible
ONLY BY DIRECT ARRANGEMENT WITH THE COPYRIGHT OWNER.
The full license text is reproduced below.
This means that TetGen is no free software, but for private, research,
and educational purposes it can be used at absolutely no cost and
without further arrangements.
For details, see http://tetgen.berlios.de
==============================================================================
TetGen
A Quality Tetrahedral Mesh Generator and 3D Delaunay Triangulator
Version 1.4 (Released on January 14, 2006).
Copyright 2002, 2004, 2005, 2006
Hang Si
Rathausstr. 9, 10178 Berlin, Germany
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
Distribution of modified versions of this code is permissible UNDER
THE CONDITION THAT THIS CODE AND ANY MODIFICATIONS MADE TO IT IN THE
SAME SOURCE FILES tetgen.h AND tetgen.cxx REMAIN UNDER COPYRIGHT OF
THE ORIGINAL AUTHOR, BOTH SOURCE AND OBJECT CODE ARE MADE FREELY
AVAILABLE WITHOUT CHARGE, AND CLEAR NOTICE IS GIVEN OF THE
MODIFICATIONS.
Distribution of this code for any commercial purpose is permissible
ONLY BY DIRECT ARRANGEMENT WITH THE COPYRIGHT OWNER.
The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
## CGAL:
We use some packages from:
CGAL, Computational Geometry Algorithms Library, http://www.cgal.org
Which are either licensed under GPL or LGPL. This prevents using some parts
of Nirfast's mesh generation tools for commercial applications. In particular
'image2mesh_gui' should NOT be used for commercial applications.
LGPL: http://www.gnu.org/copyleft/lesser.html
GPL: http://www.gnu.org/copyleft/gpl.html
## excoef.txt:
Hemoglobin values from Scott Prahl found at http://omlc.ogi.edu/spectra/hemoglobin/summary.html. Values were multiplied by 2.303 to convert from base e to base 10 and divided by 10,000 to convert from cm-1/M to mm-1/mM.
Water values from Hale and Query found at http://omlc.ogi.edu/spectra/water/data/hale73.dat. Values were divided by 10 to convert from cm-1 to mm-1
Lipid values from Veen et al found at http://omlc.ogi.edu/spectra/fat/fat.txt. Values were divided by 1000 to convert from m-1 to mm-1
## Mouse Atlas:
The mouse atlas was generated using information from the following:
George Alexandrakis, Fernando R Rannou, and Arion F Chatziioannou. "Tomographic bioluminescence imaging by use of a combined optical-PET (OPET) system: a computer simulation feasibility study." In Physics In Medicine And Biology. 50 (2005) 4225-4241.
## Stellar:
/* Jonathan Richard Shewchuk */
/* 965 Sutter Street #815 */
/* San Francisco, California 94109-6082 */
/* [email protected] */
/* ======================= BSD license begins here. ======================= */
/* */
/* Redistribution and use in source and binary forms, with or without */
/* modification, are permitted provided that the following conditions are */
/* met: */
/* */
/* - Redistributions of source code must retain the above copyright notice, */
/* this list of conditions and the following disclaimer. */
/* */
/* - Redistributions in binary form must reproduce the above copyright */
/* notice, this list of conditions and the following disclaimer in the */
/* documentation and/or other materials provided with the distribution. */
/* */
/* - Neither the name of Jonathan Shewchuk nor the name of the University */
/* of California nor the names of its contributors may be used to endorse */
/* or promote products derived from this software without specific prior */
/* written permission. */
/* */
/* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS */
/* IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED */
/* TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A */
/* PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT */
/* OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, */
/* SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED */
/* TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR */
/* PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF */
/* LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING */
/* NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS */
/* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */
/* */
/* ======================== BSD license ends here. ======================== */