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@nipreps

NeuroImaging PREProcessing toolS

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

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  1. fmriprep fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 639 296

  2. dmriprep dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 65 24

  3. smriprep smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 134 40

  4. mriqc mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 302 132

Repositories

Showing 10 of 52 repositories
  • nipreps.github.io Public

    The NiPreps landing page

    nipreps/nipreps.github.io’s past year of commit activity
    Python 3 CC0-1.0 11 6 (1 issue needs help) 1 Updated Dec 14, 2024
  • fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/fmriprep’s past year of commit activity
    HTML 639 Apache-2.0 296 303 (24 issues need help) 12 Updated Dec 13, 2024
  • nibabies Public

    fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI

    nipreps/nibabies’s past year of commit activity
    Python 23 Apache-2.0 11 33 1 Updated Dec 13, 2024
  • smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    nipreps/smriprep’s past year of commit activity
    Python 134 Apache-2.0 40 57 (1 issue needs help) 6 Updated Dec 12, 2024
  • niworkflows Public

    Common workflows for MRI (anatomical, functional, diffusion, etc)

    nipreps/niworkflows’s past year of commit activity
    Python 90 Apache-2.0 52 61 (3 issues need help) 6 Updated Dec 12, 2024
  • version-schemes Public

    setuptools_scm plugin for nipreps version schemes

    nipreps/version-schemes’s past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Dec 10, 2024
  • fmripost-aroma Public

    Run ICA-AROMA on fMRIPrep derivatives

    nipreps/fmripost-aroma’s past year of commit activity
    Python 9 Apache-2.0 2 17 2 Updated Dec 10, 2024
  • acres Public

    Data-loading utility for Python

    nipreps/acres’s past year of commit activity
    Python 0 Apache-2.0 1 1 0 Updated Dec 9, 2024
  • xfm_store Public

    A repository to store inter-template registrations between templateflow templates

    nipreps/xfm_store’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Dec 9, 2024
  • eddymotion Public

    Open-source eddy-current and head-motion correction for dMRI.

    nipreps/eddymotion’s past year of commit activity
    Python 15 Apache-2.0 16 32 (1 issue needs help) 11 Updated Dec 8, 2024

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