Code

sentieon-bwamem#994

Code

Merged

maxulysse merged 12 commits intosentieonnf-core/sarek:sentieonfrom add_sentieon_bwamemnf-core/sarek:add_sentieon_bwamemCopy head branch name to clipboardApr 13, 2023

+444-9

Commits

Commits on Apr 12, 2023

• WIP: Adding the aligner sentieon-bwamem to new subworkflow FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON

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• Minor adjustments for sentieon bwamem

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• Setting up CI-test of sentieon-bwamem

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• Adding package cryptography to python env

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• Blackened

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• Moving license_message.py

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Commits on Apr 13, 2023

• WIP: Trying to avoid using sentieon-bwaindex

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• Move sentieon/bwamem to aligner-section

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• Update conf/modules/prepare_genome.config

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• Update workflows/sarek.nf

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• Update .github/workflows/pytest-workflow.yml

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• Fixing CI-test for sentieon/bwamem and getting rid of more sentieon/bwaindex stuff

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