Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

FIX: add setup java 17 #1743

Merged
merged 2 commits into from
Dec 4, 2024
Merged

FIX: add setup java 17 #1743

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
1a2efc2
add setup-up-java 17 for NXF latest-everything
maxulysse Dec 4, 2024
be2309d
update CHANGELOG
maxulysse Dec 4, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions .github/workflows/ci.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,11 @@ jobs:
python-version: "3.11"
architecture: "x64"

- uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
with:
distribution: "temurin"
java-version: "17"

- name: Set up Nextflow
uses: nf-core/setup-nextflow@v2
with:
Expand Down
5 changes: 5 additions & 0 deletions .github/workflows/pytest.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -87,6 +87,11 @@ jobs:
- name: Install Python dependencies
run: pip install --upgrade -r tests/requirements.txt

- uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
with:
distribution: "temurin"
java-version: "17"

- name: Install Nextflow ${{ matrix.NXF_VER }}
uses: nf-core/setup-nextflow@v2
with:
Expand Down
1 change: 1 addition & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -42,6 +42,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [1695](https://github.com/nf-core/sarek/pull/1695) - Fix and update input_schema.json
- [1702](https://github.com/nf-core/sarek/pull/1702) - Update nf-schema tests that were not failing on lenient mode
- [1712](https://github.com/nf-core/sarek/pull/1712) - Fix missing import statements on error messages when starting without samplesheet
- [1743](https://github.com/nf-core/sarek/pull/1743) - Add setup java 17 in GHA for latest Nextflow version

### Removed

Expand Down
Loading