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Important! Template update for nf-core/tools v3.0.0 #1680

Merged
merged 29 commits into from
Oct 9, 2024
Merged

Important! Template update for nf-core/tools v3.0.0 #1680

merged 29 commits into from
Oct 9, 2024

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nf-core-bot
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Version 3.0.0 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-3.0.0 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v3.0.0 release page.

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github-actions bot commented Oct 8, 2024 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit bfb35ab

+| ✅ 213 tests passed       |+
#| ❔  12 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.0
  • Run at 2024-10-09 11:30:45

maxulysse
maxulysse reviewed Oct 9, 2024
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maxulysse
maxulysse reviewed Oct 9, 2024
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@maxulysse maxulysse self-requested a review October 9, 2024 10:55
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Version 3.0.1 of the nf-core/tools pipeline template has just been released. This pull-request is now outdated and has been closed in favour of #1681

Please use #1681 to merge in the new changes from the nf-core template as soon as possible.

@nf-core-bot nf-core-bot closed this Oct 9, 2024
@maxulysse maxulysse reopened this Oct 9, 2024
@maxulysse maxulysse merged commit 0e88ba1 into dev Oct 9, 2024
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@maxulysse maxulysse maxulysse approved these changes

@FriederikeHanssen FriederikeHanssen Awaiting requested review from FriederikeHanssen FriederikeHanssen is a code owner

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