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Template update for nf-core/tools version 2.11.1 #1365

Merged
merged 2 commits into from
Dec 22, 2023
Merged

Template update for nf-core/tools version 2.11.1 #1365

merged 2 commits into from
Dec 22, 2023

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mirpedrol
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Version 2.11.1 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.11.1 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.11.1 release page.

@FriederikeHanssen
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So the update is a tab? :D

@github-actions GitHub Actions
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github-actions bot commented Dec 22, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 44404b8

+| ✅ 146 tests passed       |+
#| ❔  10 tests were ignored |#
!| ❗   2 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: .github/workflows/awstest.yml
  • pipeline_todos - TODO string in WorkflowSarek.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_exist - File is ignored: .github/workflows/awsfulltest.yml
  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: assets/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-sarek_logo_dark.png
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • actions_ci - actions_ci
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/sarek/sarek/.github/workflows/awstest.yml
  • template_strings - template_strings

✅ Tests passed:

Run details

  • nf-core/tools version 2.11.1
  • Run at 2023-12-22 10:20:08

@maxulysse
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So the update is a tab? :D

Yeah, because I fixed the template within Sarek already

@maxulysse maxulysse merged commit 0fe1ab3 into dev Dec 22, 2023
23 checks passed
@maxulysse maxulysse deleted the nf-core-template-merge-2.11.1 branch January 17, 2024 09:12
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@maxulysse maxulysse maxulysse approved these changes

@FriederikeHanssen FriederikeHanssen Awaiting requested review from FriederikeHanssen FriederikeHanssen is a code owner

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@mirpedrol @FriederikeHanssen @maxulysse @nf-core-bot