remove singularity for GHA tests

nf-core · Sep 8, 2023 · 63eaf84 · 63eaf84
1 parent 9085dee
commit 63eaf84
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -39,19 +39,13 @@ jobs:
       fail-fast: false
       matrix:
         tags: ["${{ fromJson(needs.changes.outputs.tags) }}"]
-        profile: ["docker", "singularity"]
+        profile: ["docker"]
+        # profile: ["docker", "singularity", "conda"]
         TEST_DATA_BASE:
           - "test-datasets/data"
         NXF_VER:
           - "23.04.0"
           - "latest-everything"
-        exclude:
-          - profile: "singularity"
-            tags: concatenate_vcfs
-          - profile: "singularity"
-            tags: merge
-          - profile: "singularity"
-            tags: validation_checks
     env:
       NXF_ANSI_LOG: false
       TEST_DATA_BASE: "${{ github.workspace }}/test-datasets"

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -35,6 +35,7 @@ Rapaselet is a delta formed by the Rapaätno river between the Bielloriehppe mas
 - [#1198](https://github.com/nf-core/sarek/pull/1198) - Prepare release `3.3.0`
 - [#1200](https://github.com/nf-core/sarek/pull/1200) - Streamline Github Actions workflows
 - [#1212](https://github.com/nf-core/sarek/pull/1212) - Use matrix for AWS megatests
+- [#1218](https://github.com/nf-core/sarek/pull/1218) - Remove Singularity tests for GHA
 
 ### Fixed