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Factor out umi handling #3208

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Factor out umi handling

Factor out umi handling #3208

Run time

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Job Run time
Check for changes
21s
Run tests (tests/umi.nf.test docker NF-24.04.2)
17m 52s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
11m 58s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
18m 39s
Run tests (subworkflows/nf-core/bam_dedup_umi/tests/main.nf.test docker NF-24.04.2)
4m 1s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
14m 14s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
8m 38s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
14m 57s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
12m 33s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
14m 0s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
18m 36s
Run tests (tests/default.nf.test docker NF-24.04.2)
14m 22s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
8m 53s
Run tests (tests/umi.nf.test docker NF-latest-everything)
18m 20s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
11m 48s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
14m 25s
Run tests (subworkflows/nf-core/bam_dedup_umi/tests/main.nf.test docker NF-latest-everything)
3m 32s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
14m 30s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
9m 37s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
13m 41s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
12m 12s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
14m 16s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
19m 5s
Run tests (tests/default.nf.test docker NF-latest-everything)
15m 6s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
8m 43s
confirm-pass
1s
5h 14m 20s