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bump stranger to 0.9.1 (#5910)
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bump stranger
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fellen31 authored Jul 3, 2024
1 parent d153588 commit 4806239
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Showing 3 changed files with 11 additions and 11 deletions.
2 changes: 1 addition & 1 deletion modules/nf-core/stranger/environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- bioconda
- defaults
dependencies:
- bioconda::stranger=0.9.0
- bioconda::stranger=0.9.1
4 changes: 2 additions & 2 deletions modules/nf-core/stranger/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process STRANGER {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/stranger:0.9.0--pyh7cba7a3_0':
'biocontainers/stranger:0.9.0--pyh7cba7a3_0' }"
'https://depot.galaxyproject.org/singularity/stranger:0.9.1--pyh7e72e81_0':
'biocontainers/stranger:0.9.1--pyh7e72e81_0' }"

input:
tuple val(meta), path(vcf)
Expand Down
16 changes: 8 additions & 8 deletions modules/nf-core/stranger/tests/main.nf.test.snap
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@
]
],
"1": [
"versions.yml:md5,369e472eaaf24bf7d154b41bc731ac50"
"versions.yml:md5,68446c9e91e20825f7430db64e85aa7c"
],
"vcf": [
[
Expand All @@ -22,15 +22,15 @@
]
],
"versions": [
"versions.yml:md5,369e472eaaf24bf7d154b41bc731ac50"
"versions.yml:md5,68446c9e91e20825f7430db64e85aa7c"
]
}
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "24.04.2"
},
"timestamp": "2024-06-24T06:58:08.232701026"
"timestamp": "2024-07-03T08:09:27.725425094"
},
"homo_sapiens - vcf, repeat_catalogue": {
"content": [
Expand All @@ -40,29 +40,29 @@
{
"id": "test"
},
"stranger.vcf.gz:md5,bce108ecdcff045eebd6cf831be9b5a8"
"stranger.vcf.gz:md5,e933cd71d9f9f146265b8e8dd90b712c"
]
],
"1": [
"versions.yml:md5,369e472eaaf24bf7d154b41bc731ac50"
"versions.yml:md5,68446c9e91e20825f7430db64e85aa7c"
],
"vcf": [
[
{
"id": "test"
},
"stranger.vcf.gz:md5,bce108ecdcff045eebd6cf831be9b5a8"
"stranger.vcf.gz:md5,e933cd71d9f9f146265b8e8dd90b712c"
]
],
"versions": [
"versions.yml:md5,369e472eaaf24bf7d154b41bc731ac50"
"versions.yml:md5,68446c9e91e20825f7430db64e85aa7c"
]
}
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "24.04.2"
},
"timestamp": "2024-06-24T06:57:54.749238699"
"timestamp": "2024-07-03T08:09:14.472394433"
}
}

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