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update daisybio profile: use group of the launch directory for work directory #2825

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update daisybio profile: use group of the launch directory for work directory

update daisybio profile: use group of the launch directory for work directory #2825

Re-run triggered December 4, 2024 07:55
@nictrunictru
#811
JohannesKersting:update_daisybio
Status Failure
Total duration 1m 55s
Artifacts –

main.yml

on: pull_request
Check if all profiles are tested
2s
Check if all profiles are tested
Check if nextflow config runs in repository root
13s
Check if nextflow config runs in repository root
Matrix: profile_test
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177 errors and 20 warnings
Run arcc profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run awsbatch profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run alice profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run adcra profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run apollo profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run abims profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run bih profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run biohpc_gen profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run cbe profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run ceres profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run binac profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run biowulf profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run computerome profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run bigpurple profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run crukmi profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run azurebatch profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run crick profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run create profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run gis profile
The job was canceled because "arcc" failed.
Run gis profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run googlels profile
The job was canceled because "arcc" failed.
Run googlels profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run giga profile
The job was canceled because "arcc" failed.
Run giga profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run engaging profile
The job was canceled because "arcc" failed.
Run engaging profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run eddie profile
The job was canceled because "arcc" failed.
Run eddie profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run ebc profile
The job was canceled because "arcc" failed.
Run ebc profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run cedars profile
The job was canceled because "arcc" failed.
Run cedars profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run embl_hd profile
The job was canceled because "arcc" failed.
Run embl_hd profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run bluebear profile
The job was canceled because "arcc" failed.
Run bluebear profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run ilifu profile
The job was canceled because "arcc" failed.
Run ilifu profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run icr_davros profile
The job was canceled because "arcc" failed.
Run icr_davros profile
The operation was canceled.
Run ifb_core profile
The job was canceled because "arcc" failed.
Run ifb_core profile
The operation was canceled.
Run hki profile
The job was canceled because "arcc" failed.
Run hki profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run hypatia profile
The job was canceled because "arcc" failed.
Run hypatia profile
The operation was canceled.
Run google profile
The job was canceled because "arcc" failed.
Run google profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run genouest profile
The job was canceled because "arcc" failed.
Run genouest profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run googlebatch profile
The job was canceled because "arcc" failed.
Run googlebatch profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run fub_curta profile
The job was canceled because "arcc" failed.
Run fub_curta profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run fgcz profile
The job was canceled because "arcc" failed.
Run eva profile
The job was canceled because "arcc" failed.
Run fgcz profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run eva profile
The operation was canceled.
Run ebi_codon_slurm profile
The job was canceled because "arcc" failed.
Run ebi_codon_slurm profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run dkfz profile
The job was canceled because "arcc" failed.
Run dkfz profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run denbi_qbic profile
The job was canceled because "arcc" failed.
Run daisybio profile
The job was canceled because "arcc" failed.
Run denbi_qbic profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run daisybio profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run cheaha profile
The job was canceled because "arcc" failed.
Run cheaha profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run csiro_petrichor profile
The job was canceled because "arcc" failed.
Run csiro_petrichor profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run cfc_dev profile
The job was canceled because "arcc" failed.
Run cfc_dev profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run cfc profile
The job was canceled because "arcc" failed.
Run ceci_nic5 profile
The job was canceled because "arcc" failed.
Run cfc profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run ceci_nic5 profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run ceci_dragon2 profile
The job was canceled because "arcc" failed.
Run ceci_dragon2 profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run ccga_med profile
The job was canceled because "arcc" failed.
Run ccga_med profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run cambridge profile
The job was canceled because "arcc" failed.
Run cambridge profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run ccga_dx profile
The job was canceled because "arcc" failed.
Run ccga_dx profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run bi profile
The job was canceled because "arcc" failed.
Run aws_tower profile
The job was canceled because "arcc" failed.
Run bi profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run aws_tower profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run crg profile
The job was canceled because "arcc" failed.
Run einstein profile
The job was canceled because "arcc" failed.
Run crg profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run einstein profile
The operation was canceled.
Run ethz_euler profile
The job was canceled because "arcc" failed.
Run ethz_euler profile
The operation was canceled.
Run ebi_codon profile
The job was canceled because "arcc" failed.
Run ebi_codon profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run imb profile
The job was canceled because "arcc" failed.
Run imb profile
A task was canceled.
Run hasta profile
The job was canceled because "arcc" failed.
Run hasta profile
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run oist profile
The job was canceled because "arcc" failed.
Run nyu_hpc profile
The job was canceled because "arcc" failed.
Run nci_gadi profile
The job was canceled because "arcc" failed.
Run munin profile
The job was canceled because "arcc" failed.
Run nygc profile
The job was canceled because "arcc" failed.
Run nu_genomics profile
The job was canceled because "arcc" failed.
Run mpcdf profile
The job was canceled because "arcc" failed.
Run mjolnir_globe profile
The job was canceled because "arcc" failed.
Run mpcdf_viper profile
The job was canceled because "arcc" failed.
Run mccleary profile
The job was canceled because "arcc" failed.
Run medair profile
The job was canceled because "arcc" failed.
Run incliva profile
The job was canceled because "arcc" failed.
Run marvin profile
The job was canceled because "arcc" failed.
Run marjorie profile
The job was canceled because "arcc" failed.
Run imperial profile
The job was canceled because "arcc" failed.
Run pasteur profile
The job was canceled because "arcc" failed.
Run pawsey_nimbus profile
The job was canceled because "arcc" failed.
Run pawsey_setonix profile
The job was canceled because "arcc" failed.
Run ipop_up profile
The job was canceled because "arcc" failed.
Run janelia profile
The job was canceled because "arcc" failed.
Run pe2 profile
The job was canceled because "arcc" failed.
Run pdc_kth profile
The job was canceled because "arcc" failed.
Run phoenix profile
The job was canceled because "arcc" failed.
Run jax profile
The job was canceled because "arcc" failed.
Run psmn profile
The job was canceled because "arcc" failed.
Run jex profile
The job was canceled because "arcc" failed.
Run kaust profile
The job was canceled because "arcc" failed.
Run leicester profile
The job was canceled because "arcc" failed.
Run ku_sund_danhead profile
The job was canceled because "arcc" failed.
Run m3c profile
The job was canceled because "arcc" failed.
Run lugh profile
The job was canceled because "arcc" failed.
Run qmul_apocrita profile
The job was canceled because "arcc" failed.
Run rosalind_uge profile
The job was canceled because "arcc" failed.
Run mana profile
The job was canceled because "arcc" failed.
Run rosalind profile
The job was canceled because "arcc" failed.
Run genotoul profile
The job was canceled because "arcc" failed.
Run genotoul profile
The operation was canceled.
Run maestro profile
The job was canceled because "arcc" failed.
Run sage profile
The job was canceled because "arcc" failed.
Run sanger profile
The job was canceled because "arcc" failed.
Run roslin profile
The job was canceled because "arcc" failed.
Run sahmri profile
The job was canceled because "arcc" failed.
Run scw profile
The job was canceled because "arcc" failed.
Run self_hosted_runner profile
The job was canceled because "arcc" failed.
Run seawulf profile
The job was canceled because "arcc" failed.
Run shu_bmrc profile
The job was canceled because "arcc" failed.
Run seg_globe profile
The job was canceled because "arcc" failed.
Run tigem profile
The job was canceled because "arcc" failed.
Run tes profile
The job was canceled because "arcc" failed.
Run software_license profile
The job was canceled because "arcc" failed.
Run stjude profile
The job was canceled because "arcc" failed.
Run tubingen_apg profile
The job was canceled because "arcc" failed.
Run tufts profile
The job was canceled because "arcc" failed.
Run tuos_stanage profile
The job was canceled because "arcc" failed.
Run ucl_myriad profile
The job was canceled because "arcc" failed.
Run ucl_cscluster profile
The job was canceled because "arcc" failed.
Run uge profile
The job was canceled because "arcc" failed.
Run ucd_sonic profile
The job was canceled because "arcc" failed.
Run unc_lccc profile
The job was canceled because "arcc" failed.
Run unc_longleaf profile
The job was canceled because "arcc" failed.
Run uct_hpc profile
The job was canceled because "arcc" failed.
Run unsw_katana profile
The job was canceled because "arcc" failed.
Run uppmax profile
The job was canceled because "arcc" failed.
Run unibe_ibu profile
The job was canceled because "arcc" failed.
Run utd_ganymede profile
The job was canceled because "arcc" failed.
Run uzl_omics profile
The job was canceled because "arcc" failed.
Run uw_hyak_pedslabs profile
The job was canceled because "arcc" failed.
Run uzh profile
The job was canceled because "arcc" failed.
Run vai profile
The job was canceled because "arcc" failed.
Run uod_hpc profile
The job was canceled because "arcc" failed.
Run vsc_ugent profile
The job was canceled because "arcc" failed.
Run vsc_calcua profile
The job was canceled because "arcc" failed.
Run wehi profile
The job was canceled because "arcc" failed.
Run vsc_kul_uhasselt profile
The job was canceled because "arcc" failed.
Run york_viking profile
The job was canceled because "arcc" failed.
Run xanadu profile
The job was canceled because "arcc" failed.
Run wustl_htcf profile
The job was canceled because "arcc" failed.
Check if nextflow config runs in repository root
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Check if all profiles are tested
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run arcc profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run awsbatch profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run alice profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run adcra profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run apollo profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run abims profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run bih profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run biohpc_gen profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run cbe profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run ceres profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run binac profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run biowulf profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run computerome profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run bigpurple profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run crukmi profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run azurebatch profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run crick profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run create profile
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636