fix syntax for doctests

navis-org · Dec 16, 2024 · fcca47a · fcca47a
1 parent d1ce83d
commit fcca47a
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Showing 6 changed files with 13 additions and 13 deletions.
diff --git a/navis/core/base.py b/navis/core/base.py
@@ -613,7 +613,7 @@ def convert_units(
         should become `np.float32(266476.88)` instead of `266476.8`)
         >>> import navis
         >>> if int(np.version.version.split('.')[0])>=2:
-                np.set_printoptions(legacy="1.25")
+        ...     np.set_printoptions(legacy="1.25")
         >>> n = navis.example_neurons(1)
         >>> n.units
         <Quantity(8, 'nanometer')>

diff --git a/navis/core/skeleton.py b/navis/core/skeleton.py
@@ -1427,7 +1427,7 @@ def snap(self, locs, to='nodes'):
         should become `np.int32(1124)` instead of `1124`)
         >>> import navis
         >>> if int(np.version.version.split('.')[0])>=2:
-                np.set_printoptions(legacy="1.25")
+        ...     np.set_printoptions(legacy="1.25")
         >>> n = navis.example_neurons(1)
         >>> id, dist = n.snap([0, 0, 0])
         >>> id

diff --git a/navis/graph/graph_utils.py b/navis/graph/graph_utils.py
@@ -1083,7 +1083,7 @@ def find_main_branchpoint(
     should become `np.int32(110)` instead of `110`)
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(1)
     >>> navis.find_main_branchpoint(n, reroot_soma=True)
     110

diff --git a/navis/intersection/intersect.py b/navis/intersection/intersect.py
@@ -205,7 +205,7 @@ def in_volume(x: Union['core.NeuronObject', Sequence, pd.DataFrame],
 
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(1)
     >>> lh = navis.example_volume('LH')
     >>> n_lh = navis.in_volume(n, lh, inplace=False)

diff --git a/navis/morpho/mmetrics.py b/navis/morpho/mmetrics.py
@@ -153,7 +153,7 @@ def strahler_index(
 
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(2, kind='skeleton')
     >>> n.reroot(n.soma, inplace=True)
     >>> _ = navis.strahler_index(n)
@@ -562,7 +562,7 @@ def arbor_segregation_index(x: "core.NeuronObject") -> "core.NeuronObject":
 
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(1)
     >>> n.reroot(n.soma, inplace=True)
     >>> _ = navis.arbor_segregation_index(n)
@@ -717,7 +717,7 @@ def bending_flow(x: "core.NeuronObject") -> "core.NeuronObject":
 
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(1)
     >>> n.reroot(n.soma, inplace=True)
     >>> _ = navis.bending_flow(n)
@@ -993,7 +993,7 @@ def synapse_flow_centrality(
 
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(2)
     >>> n.reroot(n.soma, inplace=True)
     >>> _ = navis.synapse_flow_centrality(n)
@@ -1204,7 +1204,7 @@ def flow_centrality(x: "core.NeuronObject") -> "core.NeuronObject":
 
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(2)
     >>> n.reroot(n.soma, inplace=True)
     >>> _ = navis.flow_centrality(n)
@@ -1356,7 +1356,7 @@ def tortuosity(
     should become `np.float64(1.074)` instead of `1.074`)
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(1)
     >>> # Calculate tortuosity as-is
     >>> T = navis.tortuosity(n)
@@ -1671,7 +1671,7 @@ def betweeness_centrality(
 
     >>> import navis
     >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
+    ...     np.set_printoptions(legacy="1.25")
     >>> n = navis.example_neurons(2, kind='skeleton')
     >>> n.reroot(n.soma, inplace=True)
     >>> _ = navis.betweeness_centrality(n)

diff --git a/navis/nbl/utils.py b/navis/nbl/utils.py
@@ -203,9 +203,9 @@ def update_scores(queries, targets, scores_ex, nblast_func, **kwargs):
     Once numpy<=2 is dropped from requirements, the doctest comparissons
     should become `np.True_` instead of `True`)
     >>> import navis
-    >>> if int(np.version.version.split('.')[0])>=2:
-            np.set_printoptions(legacy="1.25")
     >>> import numpy as np
+    >>> if int(np.version.version.split('.')[0])>=2:
+    ...     np.set_printoptions(legacy="1.25")
     >>> nl = navis.example_neurons(n=5)
     >>> dp = navis.make_dotprops(nl, k=5) / 125
     >>> # Full NBLAST