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Enable system metrics in mosaic mlflow logger #2775

Merged
merged 6 commits into from
Dec 19, 2023
Merged

Enable system metrics in mosaic mlflow logger #2775

merged 6 commits into from
Dec 19, 2023

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chenmoneygithub
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@chenmoneygithub chenmoneygithub commented Dec 12, 2023 •
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What does this PR do?

Enable system metrics in mosaic mlflow logger. The default mode is on.

Please see the screenshot:
Screenshot 2023-12-11 at 5 05 58 PM

The order is a bit strange when there are multiple GPUs, we should fix it on the mlflow side. But it does not affect this PR.

What issue(s) does this change relate to?

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  • Have you read the contributor guidelines?
  • Is this change a documentation change or typo fix? If so, skip the rest of this checklist.
  • Was this change discussed/approved in a GitHub issue first? It is much more likely to be merged if so.
  • Did you update any related docs and document your change?
  • Did you update any related tests and add any new tests related to your change? (see testing)
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@chenmoneygithub chenmoneygithub requested review from eracah, dakinggg and a team as code owners December 12, 2023 00:28
eracah
eracah reviewed Dec 12, 2023
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Does this work for multinode?

tests/loggers/test_mlflow_logger.py Outdated Show resolved Hide resolved
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@eracah As discussed offline, multi-node support is super tricky to add to MLflow as a native support, because different platforms have their own communication protocol. While we would be interested to add this support, I am expecting it to take weeks to build a partially-working solution, so we won't be there in the near future...

mvpatel2000
mvpatel2000 reviewed Dec 13, 2023
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Minor nits:

composer/loggers/mlflow_logger.py Outdated Show resolved Hide resolved
composer/loggers/mlflow_logger.py Outdated Show resolved Hide resolved
composer/loggers/mlflow_logger.py Outdated Show resolved Hide resolved
eracah
eracah approved these changes Dec 14, 2023
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LGTM

composer/loggers/mlflow_logger.py Show resolved Hide resolved
dakinggg
dakinggg reviewed Dec 15, 2023
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Could you share a link to an experiment with system metrics I can look at? and/or a list of all the system metrics that are tracked?

tests/loggers/test_mlflow_logger.py Show resolved Hide resolved
@chenmoneygithub chenmoneygithub merged commit 420cb07 into mosaicml:dev Dec 19, 2023
16 checks passed
cli99 added a commit that referenced this pull request Jan 17, 2024
@cli99 @j316chuck
@aspfohl @bmosaicml @mvpatel2000 @chenmoneygithub @dakinggg @coryMosaicML @panchalhp-db @willgleich @irenedea @dependabot @snarayan21 @jerrychen109 @eracah @abhi-databricks @b-chu @abhi-mosaic
Abra merge test (#2870)
76a0e43 
* Bump torch to 2.1.1 version (#2717)

* Add more info when run doesnt complete (#2751)

* Lower sequence generation length on code gen to be dependent on max canonical solution length  (#2682)

* sequentialize generations_per_sample

* fix bug

* lower generation length

* lower generation length

* lower generation length

* fix gen len

* restore

* restore

* restore

* fix tests

* fix test

* Remove flatten params (#2761)

* remove flatten params

* simplify tests

* simplify tests

* clean

* fix more tests

* rerun tests

* speed up icl

* fix tests

* fix cpu tests

* add more fixtures

* fix tests

* token count

* fix vocab size

* remove logger

* remove clears

* fix mosaicml logger

* change codeowners

* clean up codeowners

* rerun tests

* shrink dataset

* fix tests

* fix test

* rerun tests

* fix tests

* fix tests

* fix seed

* set to 0

* rerun tests

* rerun tests

* change threshold

* rerun tests

* rerun tests

* logs

* remove changes

* logs

* logs

* remove logs

* rerun tests

* rerun tests

* logs

* rerun

* logs

* rerun

* rerun

* rerun tests

* many more logs

* rerun tests

* strip logs

* enable tests

* remove opt

* rerun tests

* add test

* lint

* rerun tests

* fix lint

* lint

* filter warnings

* rerun tests

* fixture

* add fixture

* change

* logs

* rerun tests

* add logs

* rerun tests

* fixture

* lint

* lint

* rerun tests

* fix ignore warning

* logs

* regex

* regex

* regex

* fix

* logs

* reformat

* fix lint (#2767)

* lint (#2768)

* Use time.tokens for speedmonitor instead of dataset length (#2762)

* change token math

* tokens

* add test

* fix tests

* remove exception (#2759)

* time to clean up time parsing 😉 (#2770)

* time to clean up time parsing

* fix type error

* updates

* Upgrade RunConfig compute specification (#2772)

* Upgrade RunConfig compute specification

* extra cluster

* Use async logging in MLflowLogger (#2693)

* async mlflow logging

Signed-off-by: chenmoneygithub <[email protected]>

* small fix

Signed-off-by: chenmoneygithub <[email protected]>

* clean up

* fix test

* fix tests

* deflake

* pin mlflow

---------

Signed-off-by: chenmoneygithub <[email protected]>

* Fix FSDP _param_init_fn to not reinit parameters multiple times (#2765)

* Gate FSDP param init test on torch 2.1 (#2774)

* Parallelize OCI multipart download (#2750)

* [UCVolumes] Add support for list API (#2769)

* Add the memory timeline profiling support through the PyTorch profiler. (#2771)

* v1

* fix issues

* add logs

* change names

* comment

* add device

* uncomment original trace

* add custome plot

* fix pyright

* Update composer/profiler/torch_profiler.py

Co-authored-by: Charles Tang <[email protected]>

* address comments

* fix code check

* fix formatting

* address comments

* add unit test

* fix check

* fix check

* fix check

* fix check

* fix print

* add test comment

* add test comment

---------

Co-authored-by: Mihir Patel <[email protected]>
Co-authored-by: Charles Tang <[email protected]>

* Improve torch memory profiling arguments processing (#2777)

* improve torch profile args

* improve torch profile args

* change default torch_prof_memory_filename

* add memory profiling arg test

* fix check

* fix check

* fix check

* fix check

* fix check

* fix check

* Add platform AWS and bump aws ofi nccl version (#2776)

* Extend checkpoint loading to accept a validation function (#2726)

* Fix checkpoint validation tests for torch 1.13 (#2779)

* fix checkpoint validation tests for torch 1.13

* Fix

* Bump version to 0.17.2 (#2780)

* bump version

* 0.17.2

* update matrix

* bump transformers version (#2781)

* Bump sphinxext-opengraph from 0.9.0 to 0.9.1 (#2784)

Bumps [sphinxext-opengraph](https://github.com/wpilibsuite/sphinxext-opengraph) from 0.9.0 to 0.9.1.
- [Release notes](https://github.com/wpilibsuite/sphinxext-opengraph/releases)
- [Commits](wpilibsuite/sphinxext-opengraph@v0.9.0...v0.9.1)

---
updated-dependencies:
- dependency-name: sphinxext-opengraph
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump coverage[toml] from 7.3.0 to 7.3.3 (#2783)

Bumps [coverage[toml]](https://github.com/nedbat/coveragepy) from 7.3.0 to 7.3.3.
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.3.0...7.3.3)

---
updated-dependencies:
- dependency-name: coverage[toml]
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Update torch requirement from <2.1.2,>=1.13.1 to >=1.13.1,<2.1.3 (#2785)

Updates the requirements on [torch](https://github.com/pytorch/pytorch) to permit the latest version.
- [Release notes](https://github.com/pytorch/pytorch/releases)
- [Changelog](https://github.com/pytorch/pytorch/blob/main/RELEASE.md)
- [Commits](pytorch/pytorch@v1.13.1...v2.1.2)

---
updated-dependencies:
- dependency-name: torch
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* [UCVolumes] Rely on databricks-sdk auth for the right requirements (#2789)

* Enable system metrics in mosaic mlflow logger (#2775)

* Enable system metrics in mosaic mlflow logger

* remove fixture

* Update composer/loggers/mlflow_logger.py

Co-authored-by: Mihir Patel <[email protected]>

* Update composer/loggers/mlflow_logger.py

Co-authored-by: Mihir Patel <[email protected]>

* Update composer/loggers/mlflow_logger.py

Co-authored-by: Mihir Patel <[email protected]>

---------

Co-authored-by: Mihir Patel <[email protected]>
Co-authored-by: Daniel King <[email protected]>

* Update parse_uri (#2787)

* default-no-memory-timeline (#2790)

* Add eot token to ICL generate kwargs (#2782)

* add custome gen kwargs and stopping on eos token

* modify test

* modify test

* finish

* finish

* finish

* finish

* Add nightly image for torch 2.2.0 12-20-23 (#2791)

* Add torch nightly 12-13 (#2792)

* Add process group as arg to FSDP (#2794)

* add test

* only cast if PG is specified

* add to docstring

* filter warning

* filter warning

* docs

* support lists

* remove warnings

* lint

* hsdp monkeypatch

* logs

* change log

* fix patch

* typo

* clean up logs

* Bump coverage[toml] from 7.3.3 to 7.3.4 (#2798)

Bumps [coverage[toml]](https://github.com/nedbat/coveragepy) from 7.3.3 to 7.3.4.
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.3.3...7.3.4)

---
updated-dependencies:
- dependency-name: coverage[toml]
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Fix load_ignore_keys with rng (#2803)

* fix rng load

* lint

* Bump ipykernel from 6.26.0 to 6.28.0 (#2806)

Bumps [ipykernel](https://github.com/ipython/ipykernel) from 6.26.0 to 6.28.0.
- [Release notes](https://github.com/ipython/ipykernel/releases)
- [Changelog](https://github.com/ipython/ipykernel/blob/main/CHANGELOG.md)
- [Commits](ipython/ipykernel@v6.26.0...v6.28.0)

---
updated-dependencies:
- dependency-name: ipykernel
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump junitparser from 3.1.0 to 3.1.1 (#2805)

Bumps [junitparser](https://github.com/weiwei/junitparser) from 3.1.0 to 3.1.1.
- [Changelog](https://github.com/weiwei/junitparser/blob/master/CHANGELOG.md)
- [Commits](weiwei/junitparser@3.1.0...3.1.1)

---
updated-dependencies:
- dependency-name: junitparser
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump pytest from 7.4.3 to 7.4.4 (#2807)

Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.3 to 7.4.4.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@7.4.3...7.4.4)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Avoid futures on close for MosaicML logger (#2804)

* avoid futures on close

* typo

* logs

* logs

* check (#2812)

* Better communication computation overlap (#2811)

* patched torch

* fixed torch imports

* fixed torch imports

* fixed torch imports

* patching through composer

* patching through composer

* patching typingr

* comment added

* don't patch torch 2.1.0

* patch torch 2.1.1 and 2.2.0

* linting fix

* Improve error message for speed monitor (#2801)

* fix flops

* stacklevel

* bump torch version (#2814)

* bump vision (#2815)

* fix rng load (#2816)

* Correct multi-unshard stream patching for torch 2.2.0dev, and stream waiting correctness. (#2817)

* patched torch

* fixed torch imports

* fixed torch imports

* fixed torch imports

* patching through composer

* patching through composer

* patching typingr

* comment added

* don't patch torch 2.1.0

* patch torch 2.1.1 and 2.2.0

* linting fix

* waiting on computation stream from unshard stream

* waiting on computation stream from unshard stream

* less waiting

* no waiting

* all unshard streams wait on computation stream now

* 2.2.0 dev change

* fix profiler (#2818)

* Bump traitlets from 5.13.0 to 5.14.1 (#2822)

Bumps [traitlets](https://github.com/ipython/traitlets) from 5.13.0 to 5.14.1.
- [Release notes](https://github.com/ipython/traitlets/releases)
- [Changelog](https://github.com/ipython/traitlets/blob/main/CHANGELOG.md)
- [Commits](ipython/traitlets@v5.13.0...v5.14.1)

---
updated-dependencies:
- dependency-name: traitlets
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* All unshard streams wait on computation every step (#2823)

* patched torch

* fixed torch imports

* fixed torch imports

* fixed torch imports

* patching through composer

* patching through composer

* patching typingr

* comment added

* don't patch torch 2.1.0

* patch torch 2.1.1 and 2.2.0

* linting fix

* waiting on computation stream from unshard stream

* waiting on computation stream from unshard stream

* less waiting

* no waiting

* all unshard streams wait on computation stream now

* 2.2.0 dev change

* correct waiting on computation stream

* fsdp state typiung

* patching root pre forward

* patching root pre forward

* fsdp state typing

* patch forward

* correct waiting

* linting

* Add encoding=utf-8 (#2824)

* Fix import for daily test (#2826)

* patched torch

* fixed torch imports

* fixed torch imports

* fixed torch imports

* patching through composer

* patching through composer

* patching typingr

* comment added

* don't patch torch 2.1.0

* patch torch 2.1.1 and 2.2.0

* linting fix

* waiting on computation stream from unshard stream

* waiting on computation stream from unshard stream

* less waiting

* no waiting

* all unshard streams wait on computation stream now

* 2.2.0 dev change

* correct waiting on computation stream

* fsdp state typiung

* patching root pre forward

* patching root pre forward

* fsdp state typing

* patch forward

* correct waiting

* linting

* daily test change

* daily test fix

* [MLFlowObjectStore] [1/2] Base implementation for MLFlowObjectStore (#2802)

* Implementation of MLFlowObjectStore

* Update object store test settings

* Import mlflow dependencies inline

* Fix tests and ignore some pyright

* Bugfix

* Enforce experiment and run in get_artifact_path

* Update placeholders

* Make logs debug instead of info

* Minor PR comments

* MLflow casing

* tracking_uri fixes

* Update comments

* Update placeholders

* Fix tests

* Fix pyright

* Use tempfile for temp dirs

* Read tracking uri env var directly

* Remove dist from MLFlowObjectStore

---------

Co-authored-by: Daniel King <[email protected]>

* Remove fused layernorm (already deprecated for 2 versions) (#2827)

* remove fused layernorm

* remove import

* remove import

* remove

* fix

* remove docs

* all

* fix

* filter warnings

* norm

* lint

* refactor

---------

Co-authored-by: Your Name <[email protected]>

* checkpoint saver tracks all checkpoints/intervals in state (#2819)

* checkpoint tracking state

* fix some tests

* Update tests/callbacks/test_checkpoint_saver.py

* Checkpoint itself should be included in state, dont pickle timestamp object

* patch the key error (doesnt fix the bug though :sad:)

* avoid slashes in state, adjust tests

* fix gpu test, probably

* formatting

* feedback

* add a comment

* Apply suggestions from code review

Co-authored-by: Mihir Patel <[email protected]>

---------

Co-authored-by: Mihir Patel <[email protected]>

* code-quality timeout update (#2830)

Timed out after 10 minutes here https://github.com/mosaicml/composer/actions/runs/7465107219/job/20313553654?pr=2819 

Bumps runtime up to 15min

* [S] Fix how single value tensors are logged (#2831)

Co-authored-by: Daniel King <[email protected]>

* Adds DTensor Support (#2821)

* fixes to get dtensor to work

* more fixes

* Change state dict materialization for new version of torch

* get load working for new set_state_dict api

* use device_mesh

* Add fsdp init monkeypatch for DTensor

* Add checkpoint profiling logs

* attempt

* working single node

* fix optimizer

* allow 3d device mesh

* attempt to use different pg during 3d mesh save

* undo 3d mesh changes

* load_state_dict -> load

* allow parent mesh in FSDP init

* allow override of force_sync_module_states

* remove unnecessary exit

* ignore _validate_and_get_shard_state()

* save/load hsdp-moe working

* remove prints

* v1

* v2

* lint

* add more tests

* switch to PRs

* ignore warning

* fix lint

* version error

* fix version

* fix state dict

* update versions

* lint

* lint

* disable lint for mosaic fsdp utils

* remove bad line

* move around for legacy

* device mesh

* ignore warning

* fix import

* always init

* fix error

* fix load planner

* remove

* fix lint

* lint

* delay state dict

* test checkpoint

* checkpoint

* fix cpu tests

* fix rotate tests

* fix precision

* lint

* fix alibi

* cleanup

* cleanup

* remove force sync

* fix type

* merge

* lint

* fix gpt

* comment

* fix test

* lint

* minor optimizations

* Update composer/core/state.py

Co-authored-by: Evan Racah <[email protected]>

* revert tests

---------

Co-authored-by: Evan Racah <[email protected]>
Co-authored-by: Abhinav Venigalla <[email protected]>
Co-authored-by: root <[email protected]>
Co-authored-by: Abhinav Venigalla <[email protected]>
Co-authored-by: Your Name <[email protected]>
Co-authored-by: Evan Racah <[email protected]>

* Remove duplicate checkpoint verifications (#2828)

* Fix seed for FSDP wrap (#2833)

* first try

* add context

* lint

* more lint

* remove comment

---------

Co-authored-by: Daniel King <[email protected]>
Co-authored-by: Your Name <[email protected]>

* Remove fsdp patch for comm overlap (#2836)

* allow hsdp (#2838)

* Bump torch 2.1.2 (#2840)

* bump torch

* bump

* bump

* Upgrade pyright to 1.1.310 (#2841)

* [MLFlowObjectStore] [2/2] Support checkpointing with MLFlow (#2810)

* Support checkpoint uploads to MLFlow (untested)

Use MLFlow run tag for autoresume

Add MLFlowLogger test for existing composer run tag

* Try formatting mlflow save folder after INIT

Make MLFlow experiment and run ID available on all ranks

Fix path issue

Format mlflow placeholders in remote filenames

* Unit tests for partial_format

* Log mlflow info as hyperparams

* partial_format doc update

* Fix formatting

* Pull distributed logic out of MLFlowObjectStore

Add debug tracebacks

Bugfix

Add path to debug info

Try fixing RUD object store init

Pyright

* Partial format in format_name helpers

* Fix import

* Add extra partial_format test

* Fix mlflow RUD check

* Fix test

pyright

No longer expect KeyError for format_with_dist using partial_format

Refactor partial_format for readability

* Max iters on partial_format

* Fix partial_format

* Clean up

* fix test import

* Fix test

* update nightly to torch 2.3 (#2842)

* update nightly to torch 2.3

* tighten

---------

Co-authored-by: Mihir Patel <[email protected]>

* Pin sphinxcontrib applehelp (#2854)

* pin release

* bump

* break pypi

* tighter pin

* pin

* pin

* pin

* Update setup.py (#2855)

* Torch 2.3 patch (#2849)

* add monkeypatch for verify_options

* patch

* fix

* fix

* partial precommit

* bit of cleanup

* doc

* debug

* fix version pinning

* precommit

* checkdown

* lint

---------

Co-authored-by: Evan Racah <[email protected]>
Co-authored-by: Mihir Patel <[email protected]>

* Update mosaicml-cli requirement from <0.6,>=0.5.25 to >=0.5.25,<0.7 (#2866)

Updates the requirements on [mosaicml-cli](https://github.com/mosaicml/mosaicml-cli) to permit the latest version.
- [Commits](https://github.com/mosaicml/mosaicml-cli/commits)

---
updated-dependencies:
- dependency-name: mosaicml-cli
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Rewrite to use individual state functions (#2860)

* checkdown

* checkdown

* lint

* fix

* load ignore keys

* fix

* resolve comments

* fix load ignore keys

* offload

* fix gate

* merge

* lint

* use flag

* force trye

* Add custom stopping criteria to ICL generate tasks (#2800)

* add custome gen kwargs and stopping on eos token

* modify test

* modify test

* finish

* finish

* finish

* finish

* finish pr

* implement early stop

* add tesT

* fix bug

* bug fix

* add keys

* diff split

* fix typo

* fix precommit

* fix precommit

* fix precommit

* fix precommit

* fix precommit

* fix precommit

* fix conditional import

* add nlp metrics

* remove code gen changes

* fix nits

---------

Co-authored-by: Daniel King <[email protected]>

* Add save_ignore_keys (#2868)

* comment

* add it

* debug

* add the keys

* debug

* debug

* remove print statement

* docs and tests

* fix tests

---------

Co-authored-by: Daniel King <[email protected]>

---------

Signed-off-by: chenmoneygithub <[email protected]>
Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Charles Tang <[email protected]>
Co-authored-by: Anna <[email protected]>
Co-authored-by: Jeremy D <[email protected]>
Co-authored-by: Mihir Patel <[email protected]>
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@dakinggg dakinggg mentioned this pull request Feb 5, 2024
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