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[js/test] align web test runner flags with ort.env (#19790)
### Description the `npm test` flags are difficult to memorize, because they are different to the `ort.env` flags. This change makes those flags align with ort JS API. eg. `--wasm-enable-proxy` became `--wasm.proxy`. Old flags are marked as deprecated except `-x` (as a shortcut of `--wasm.numThreads`)
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