IM-1787: Improve memory efficiency of threshold plugin#1913

Merged

gavinevans merged 35 commits intometoppv:masterfrom bayliffe:im1787

Oct 20, 2023

+1,862-334

Commits on Jun 16, 2023

Making threshold more efficient.
bayliffe
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Getting the contributions right when using masked data.
bayliffe
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Correct unit setting bug.
bayliffe
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Beginning to restructure.
bayliffe
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Changing interfaces, simplifying CLI, and updating unit tests. Incomplete.
bayliffe
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Break up the occurence within vicinity plugin to allow use of components within the threshold plugin.
bayliffe
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Figuring out where the vicinity processing differs.
bayliffe
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Add new exception. May be temporary.
bayliffe
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more incremental changes.
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Final fixes to vicinity processing from within the threshold plugin.
bayliffe
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Format changes.
bayliffe
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Remove defunct test. Add array slicing to avoid swelling memory when broadcasting arrays.
bayliffe
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Use a slice iterator rather than list to reduce memory usage. As suggested by Stephen Moseley.
bayliffe
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Set self.fill_masked which was lost in rebase.
bayliffe
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Remove assumption of realization coordinate added when changing to use iterator.
bayliffe
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Modify threshold such that it can once again accept a single threshold value rather than a list. Work through interface changes in other plugins.
bayliffe
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Remove doc-strings relating to fuzzy-bounds, the setting of which using an argument has been removed.
bayliffe
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Add unit tests to cover the vicinity processing applied within the threshold plugin. This was previously all performed in the CLI and thus not covered by unit tests in this specific context.
bayliffe
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Format fixes.
bayliffe
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Commits on Jul 27, 2023

Merge remote-tracking branch 'upstream/master' into im1787
bayliffe
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Commits on Jul 31, 2023

Replicate percentile collapse functionality.
bayliffe
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Commits on Aug 2, 2023

Commits on Aug 3, 2023

Commits on Aug 4, 2023

Commits on Aug 25, 2023

Partial review response.
bayliffe
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Commits on Aug 30, 2023

Further review changes.
bayliffe
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Commits on Sep 12, 2023

Further review tweaks.
bayliffe
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Commits on Sep 14, 2023

Commits on Oct 17, 2023