Parallel K Core Decomposition Algorithm #14500
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| name: CI Workflow | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| push: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| inputs: | |
| auto_checkpoint: | |
| description: 'Database config - auto checkpoint' | |
| required: false | |
| default: true | |
| type: boolean | |
| buffer_pool_size: | |
| description: 'Database config - buffer pool size' | |
| required: false | |
| default: 67108864 | |
| type: number | |
| max_num_threads: | |
| description: 'Database config - max number of threads' | |
| required: false | |
| default: 2 | |
| type: number | |
| enable_compression: | |
| description: 'Database config - enable compression' | |
| required: false | |
| default: true | |
| type: boolean | |
| checkpoint_threshold: | |
| description: 'Database config - checkpoint threshold' | |
| required: false | |
| default: 16777216 | |
| type: number | |
| env: | |
| RUNTIME_CHECKS: 1 | |
| USE_EXISTING_BINARY_DATASET: 1 | |
| AUTO_CHECKPOINT: ${{ github.event.inputs.auto_checkpoint }} | |
| BUFFER_POOL_SIZE: ${{ github.event.inputs.buffer_pool_size }} | |
| MAX_NUM_THREADS: ${{ github.event.inputs.max_num_threads }} | |
| ENABLE_COMPRESSION: ${{ github.event.inputs.enable_compression }} | |
| CHECKPOINT_THRESHOLD: ${{ github.event.inputs.checkpoint_threshold }} | |
| WERROR: 1 | |
| RUSTFLAGS: --deny warnings | |
| PIP_BREAK_SYSTEM_PACKAGES: 1 | |
| # Only allow one run in this group to run at a time, and cancel any runs in progress in this group. | |
| # We use the workflow name and then add the pull request number, or (if it's a push to master), we use the name of the branch. | |
| # See github's docs[1] and a relevant stack overflow answer[2] | |
| # [1]: https://docs.github.com/en/actions/using-jobs/using-concurrency | |
| # [2]: https://stackoverflow.com/questions/66335225/how-to-cancel-previous-runs-in-the-pr-when-you-push-new-commitsupdate-the-curre | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| generate-binary-datasets: | |
| name: generate binary dataset | |
| needs: [sanity-checks, python-lint-check] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| NUM_THREADS: 32 | |
| GEN: Ninja | |
| CC: gcc | |
| CXX: g++ | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build | |
| run: make release | |
| - name: Generate datasets | |
| run: bash scripts/generate_binary_demo.sh | |
| - name: Generate and upload tinysnb | |
| run: | | |
| bash scripts/generate_binary_tinysnb.sh | |
| s3cmd get s3://kuzu-test/tinysnb/version.txt || echo "0" > version.txt | |
| if [ "$(cat tinysnb/version.txt)" == "$(cat version.txt)" ]; then | |
| echo "TinySNB dataset is up to date, skipping upload" | |
| rm -rf tinysnb version.txt | |
| exit 0 | |
| fi | |
| echo "TinySNB dataset is outdated, uploading..." | |
| s3cmd del -r s3://kuzu-test/tinysnb/ | |
| s3cmd sync ./tinysnb s3://kuzu-test/ | |
| rm -rf tinysnb version.txt | |
| - name: Generate and upload ldbc-sf01 | |
| run: | | |
| bash scripts/generate_binary_ldbc-sf01.sh | |
| s3cmd get s3://kuzu-test/ldbc01/version.txt || echo "0" > version.txt | |
| if [ "$(cat ldbc01/version.txt)" == "$(cat version.txt)" ]; then | |
| echo "LDBC-SF01 dataset is up to date, skipping upload" | |
| rm -rf ldbc01 version.txt | |
| exit 0 | |
| fi | |
| echo "LDBC-SF01 dataset is outdated, uploading..." | |
| s3cmd del -r s3://kuzu-test/ldbc01/ | |
| s3cmd sync ./ldbc01 s3://kuzu-test/ | |
| rm -rf ldbc01 version.txt | |
| - name: Upload binary-demo | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: dataset/binary-demo | |
| gcc-build-test: | |
| name: gcc build & test | |
| needs: [sanity-checks, python-lint-check, generate-binary-datasets] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| NUM_THREADS: 32 | |
| CMAKE_BUILD_PARALLEL_LEVEL: 32 | |
| TEST_JOBS: 16 | |
| CLANGD_DIAGNOSTIC_JOBS: 32 | |
| CLANGD_DIAGNOSTIC_INSTANCES: 6 | |
| GEN: Ninja | |
| CC: gcc | |
| CXX: g++ | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| RUN_ID: "$(hostname)-$(date +%s)" | |
| HTTP_CACHE_FILE: TRUE | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download binary-demo | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: ${{ github.workspace }}/dataset/binary-demo | |
| - name: Ensure Python dependencies | |
| run: | | |
| pip install torch~=2.2.0 --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install --user -r tools/python_api/requirements_dev.txt -f https://data.pyg.org/whl/torch-2.2.0+cpu.html | |
| - name: Ensure Node.js dependencies | |
| run: npm install --include=dev | |
| working-directory: tools/nodejs_api | |
| - name: Test | |
| run: | | |
| ln -s /home/runner/ldbc-1-csv dataset/ldbc-1/csv | |
| make test | |
| - name: Test in mem | |
| env: | |
| IN_MEM_MODE: true | |
| run: | | |
| make test | |
| - name: Test checkpoint at threshold 0 | |
| env: | |
| AUTO_CHECKPOINT: true | |
| CHECKPOINT_THRESHOLD: 0 | |
| run: | | |
| make test | |
| - name: Python test | |
| run: make pytest | |
| - name: Node.js test | |
| run: make nodejstest | |
| - name: Java test | |
| run: make javatest | |
| - name: Rust test with pre-built library | |
| env: | |
| KUZU_SHARED: 1 | |
| KUZU_INCLUDE_DIR: ${{ github.workspace }}/build/release/src | |
| KUZU_LIBRARY_DIR: ${{ github.workspace }}/build/release/src | |
| run: make rusttest | |
| gcc-build-test-in-mem-vector-size: | |
| name: gcc build & test in-mem only with various vector size | |
| needs: [gcc-build-test] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| NUM_THREADS: 32 | |
| CMAKE_BUILD_PARALLEL_LEVEL: 32 | |
| TEST_JOBS: 16 | |
| CLANGD_DIAGNOSTIC_JOBS: 32 | |
| CLANGD_DIAGNOSTIC_INSTANCES: 6 | |
| GEN: Ninja | |
| CC: gcc | |
| CXX: g++ | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| RUN_ID: "$(hostname)-$(date +%s)" | |
| HTTP_CACHE_FILE: TRUE | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download binary-demo | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: ${{ github.workspace }}/dataset/binary-demo | |
| - name: Ensure Python dependencies | |
| run: | | |
| pip install torch~=2.2.0 --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install --user -r tools/python_api/requirements_dev.txt -f https://data.pyg.org/whl/torch-2.2.0+cpu.html | |
| - name: Ensure Node.js dependencies | |
| run: npm install --include=dev | |
| working-directory: tools/nodejs_api | |
| - name: Test vector 1024 | |
| env: | |
| IN_MEM_MODE: true | |
| run: | | |
| ln -s /home/runner/ldbc-1-csv dataset/ldbc-1/csv | |
| make test VECTOR_CAPACITY_LOG2=10 | |
| code-coverage: | |
| name: code coverage | |
| runs-on: ubuntu-22.04 | |
| needs: [sanity-checks, python-lint-check, generate-binary-datasets] | |
| env: | |
| TEST_JOBS: 10 | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download binary-demo | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: dataset/binary-demo | |
| - name: Install lcov | |
| run: sudo apt-get install -y lcov | |
| - name: Test with coverage | |
| run: make lcov NUM_THREADS=$(nproc) | |
| - name: Test with coverage in mem | |
| env: | |
| IN_MEM_MODE: true | |
| run: make lcov NUM_THREADS=$(nproc) | |
| - name: Generate coverage report | |
| run: | | |
| lcov --config-file .lcovrc -c -d ./ --no-external -o cover.info &&\ | |
| lcov --remove cover.info $(< .github/workflows/lcov_exclude) -o cover.info | |
| - name: Upload coverage report | |
| uses: codecov/[email protected] | |
| with: | |
| file: cover.info | |
| webassembly-build-test: | |
| name: webassembly build & test | |
| needs: [sanity-checks, generate-binary-datasets] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| WERROR: 0 | |
| TEST_JOBS: 8 | |
| NUM_THREADS: 32 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download binary-demo | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: dataset/binary-demo | |
| - name: Build & test | |
| run: | | |
| ln -s /home/runner/ldbc-1-csv dataset/ldbc-1/csv | |
| source /home/runner/emsdk/emsdk_env.sh | |
| make wasmtest | |
| - name: Build & test (single-thread mode) | |
| env: | |
| SINGLE_THREADED: true | |
| run: | | |
| make clean | |
| source /home/runner/emsdk/emsdk_env.sh | |
| make wasmtest | |
| rust-build-test: | |
| name: rust build & test | |
| needs: [rustfmt-check] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| CARGO_BUILD_JOBS: 32 | |
| CMAKE_BUILD_PARALLEL_LEVEL: 32 | |
| CC: gcc | |
| CXX: g++ | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Rust test | |
| run: make rusttest | |
| - name: Rust example | |
| working-directory: examples/rust | |
| run: cargo build --locked --features arrow | |
| gcc-build-test-with-asan: | |
| name: gcc build & test with asan | |
| needs: [gcc-build-test, generate-binary-datasets] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| NUM_THREADS: 32 | |
| TEST_JOBS: 16 | |
| GEN: Ninja | |
| CC: gcc | |
| CXX: g++ | |
| WERROR: 0 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download binary-demo | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: dataset/binary-demo | |
| - name: Ensure Python dependencies | |
| run: | | |
| pip install torch~=2.2.0 --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install --user -r tools/python_api/requirements_dev.txt -f https://data.pyg.org/whl/torch-2.2.0+cpu.html | |
| - name: Ensure Node.js dependencies | |
| run: npm install --include=dev | |
| working-directory: tools/nodejs_api | |
| - name: Test with ASAN | |
| run: make test ASAN=1 | |
| env: | |
| ASAN_OPTIONS: "detect_leaks=1" | |
| - name: Test compression disabled with ASAN | |
| env: | |
| ENABLE_COMPRESSION: false | |
| run: | | |
| make test | |
| clang-build-test: | |
| name: clang build & test | |
| needs: [sanity-checks, python-lint-check, generate-binary-datasets] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| NUM_THREADS: 32 | |
| CMAKE_BUILD_PARALLEL_LEVEL: 32 | |
| TEST_JOBS: 16 | |
| CC: clang | |
| CXX: clang++ | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| RUN_ID: "$(hostname)-$(date +%s)" | |
| HTTP_CACHE_FILE: TRUE | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download binary-demo | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: dataset/binary-demo | |
| - name: Ensure Python dependencies | |
| run: | | |
| pip install torch~=2.2.0 --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install --user -r tools/python_api/requirements_dev.txt -f https://data.pyg.org/whl/torch-2.2.0+cpu.html | |
| - name: Ensure Node.js dependencies | |
| run: npm install --include=dev | |
| working-directory: tools/nodejs_api | |
| - name: Test | |
| run: | | |
| ln -s /home/runner/ldbc-1-csv dataset/ldbc-1/csv | |
| make test | |
| - name: Test compression disabled | |
| env: | |
| ENABLE_COMPRESSION: false | |
| run: | | |
| make test | |
| - name: Python test | |
| run: make pytest | |
| - name: Node.js test | |
| run: make nodejstest | |
| - name: Java test | |
| run: make javatest | |
| - name: Rust test with pre-built library | |
| env: | |
| KUZU_SHARED: 1 | |
| KUZU_INCLUDE_DIR: ${{ github.workspace }}/build/release/src | |
| KUZU_LIBRARY_DIR: ${{ github.workspace }}/build/release/src | |
| run: make rusttest | |
| clang-build-test-various-page-sizes: | |
| strategy: | |
| matrix: | |
| page_size_log2: [16, 18] | |
| name: clang build & test with page_size_log2=${{ matrix.page_size_log2 }} | |
| needs: [clang-build-test] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| NUM_THREADS: 32 | |
| CMAKE_BUILD_PARALLEL_LEVEL: 32 | |
| TEST_JOBS: 16 | |
| CC: clang | |
| CXX: clang++ | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| RUN_ID: "$(hostname)-$(date +%s)" | |
| HTTP_CACHE_FILE: TRUE | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Ensure Python dependencies | |
| run: | | |
| pip install torch~=2.2.0 --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install --user -r tools/python_api/requirements_dev.txt -f https://data.pyg.org/whl/torch-2.2.0+cpu.html | |
| - name: Ensure Node.js dependencies | |
| run: npm install --include=dev | |
| working-directory: tools/nodejs_api | |
| - name: Build | |
| run: | | |
| ln -s /home/runner/ldbc-1-csv dataset/ldbc-1/csv | |
| make release PAGE_SIZE_LOG2=${{ matrix.page_size_log2 }} | |
| - name: Generate binary demo | |
| run: | | |
| bash scripts/generate_binary_demo.sh | |
| - name: Test | |
| run: | | |
| make test PAGE_SIZE_LOG2=${{ matrix.page_size_log2 }} | |
| msvc-build-test: | |
| name: msvc build & test | |
| needs: [sanity-checks, python-lint-check, generate-binary-datasets] | |
| runs-on: self-hosted-windows | |
| env: | |
| # Shorten build path as much as possible | |
| CARGO_TARGET_DIR: ${{ github.workspace }}/rs | |
| CARGO_BUILD_JOBS: 18 | |
| NUM_THREADS: 18 | |
| CMAKE_BUILD_PARALLEL_LEVEL: 18 | |
| TEST_JOBS: 9 | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| PG_HOST: ${{ secrets.PG_HOST }} | |
| RUN_ID: "$(hostname)-$([Math]::Floor((Get-Date).TimeOfDay.TotalSeconds))" | |
| HTTP_CACHE_FILE: TRUE | |
| WERROR: 0 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download binary-demo | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: dataset/binary-demo | |
| - name: Ensure Python dependencies | |
| run: | | |
| pip install torch~=2.0.0 --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install --user -r tools/python_api/requirements_dev.txt -f https://data.pyg.org/whl/torch-2.0.0+cpu.html | |
| - name: Ensure Node.js dependencies | |
| run: npm install --include=dev | |
| working-directory: tools/nodejs_api | |
| - name: Visual Studio Generator Build | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make all GEN="Visual Studio 17 2022" | |
| make clean | |
| - name: Test | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make test | |
| - name: Test compression disabled | |
| shell: cmd | |
| env: | |
| ENABLE_COMPRESSION: false | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make test | |
| - name: Test in mem | |
| shell: cmd | |
| env: | |
| IN_MEM_MODE: true | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make test | |
| - name: Python test | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make pytest | |
| - name: Node.js test | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make nodejstest | |
| - name: Rust test | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make rusttest | |
| - name: Java test | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make javatest | |
| - name: Rust test with pre-built library | |
| env: | |
| KUZU_SHARED: 1 | |
| KUZU_INCLUDE_DIR: ${{ github.workspace }}/build/release/src | |
| KUZU_LIBRARY_DIR: ${{ github.workspace }}/build/release/src | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| set PATH=%PATH%;${{ github.workspace }}/build/release/src | |
| make rusttest | |
| sanity-checks: | |
| name: sanity checks | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check headers for include guards | |
| run: ./scripts/check-include-guards.sh src/include | |
| - name: Checks files for std::assert | |
| run: ./scripts/check-no-std-assert.sh src | |
| - name: Ensure generated grammar files are up to date | |
| run: | | |
| python3 scripts/antlr4/hash.py src/antlr4/keywords.txt src/antlr4/Cypher.g4 > tmphashfile | |
| cmp tmphashfile scripts/antlr4/hash.md5 | |
| rm tmphashfile | |
| clang-format: | |
| name: clang format | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - name: Install clang-format | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y clang-format-18 | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| - name: Check and fix source format | |
| run: python3 scripts/run-clang-format.py --in-place --clang-format-executable /usr/bin/clang-format-18 -r src/ | |
| - name: Check and fix test format | |
| run: python3 scripts/run-clang-format.py --in-place --clang-format-executable /usr/bin/clang-format-18 -r test/ | |
| - name: Check and fix tools format | |
| run: python3 scripts/run-clang-format.py --in-place --clang-format-executable /usr/bin/clang-format-18 -r tools/ | |
| - name: Check and fix extension format | |
| run: python3 scripts/run-clang-format.py --in-place --clang-format-executable /usr/bin/clang-format-18 -r extension/ | |
| - name: Fail if any chang is made (master branch) | |
| if: github.ref == 'refs/heads/master' | |
| run: git diff --exit-code | |
| - name: Commit changes (non-master branch) | |
| uses: EndBug/add-and-commit@v9 | |
| if: github.ref != 'refs/heads/master' | |
| with: | |
| author_name: "CI Bot" | |
| message: "Run clang-format" | |
| python-lint-check: | |
| name: python lint check | |
| runs-on: macos-14 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Run Python lint | |
| working-directory: tools/python_api | |
| run: | | |
| make requirements | |
| ./.venv/bin/ruff check src_py test --verbose | |
| rustfmt-check: | |
| name: rustfmt check | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Update Rust | |
| run: rustup update | |
| - uses: actions/checkout@v4 | |
| - name: Check Rust API format | |
| working-directory: tools/rust_api | |
| run: cargo fmt --check | |
| benchmark: | |
| name: benchmark | |
| needs: [gcc-build-test, clang-build-test] | |
| uses: ./.github/workflows/benchmark-workflow.yml | |
| report-benchmark-result: | |
| name: report benchmark result | |
| needs: [benchmark] | |
| runs-on: ubuntu-22.04 | |
| if: github.event_name == 'pull_request' | |
| steps: | |
| - name: Download comparison results | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: comparison-results | |
| - name: Report benchmark result | |
| uses: thollander/actions-comment-pull-request@v2 | |
| with: | |
| filePath: compare_result.md | |
| clang-tidy: | |
| name: clang tidy & clangd diagnostics check | |
| needs: [sanity-checks] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| GEN: Ninja | |
| NUM_THREADS: 32 | |
| CC: clang | |
| CXX: clang++ | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # For `napi.h` header. | |
| - name: Ensure Node.js dependencies | |
| run: npm install --include=dev | |
| working-directory: tools/nodejs_api | |
| - name: Check for clangd diagnostics | |
| run: make clangd-diagnostics | |
| - name: Run clang-tidy | |
| run: make tidy | |
| - name: Run clang-tidy analyzer | |
| run: make tidy-analyzer | |
| macos-build-test: | |
| name: apple clang build & test | |
| needs: [sanity-checks, rustfmt-check, python-lint-check, generate-binary-datasets] | |
| runs-on: [self-hosted, macOS] | |
| env: | |
| TEST_JOBS: 16 | |
| GEN: Ninja | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| PG_HOST: ${{ secrets.PG_HOST }} | |
| RUN_ID: "$(hostname)-$(date +%s)" | |
| HTTP_CACHE_FILE: TRUE | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Determine NUM_THREADS | |
| run: | | |
| export NUM_THREADS=$(($(sysctl -n hw.logicalcpu) * 2 / 3)) | |
| if [ $NUM_THREADS -lt 12 ]; then | |
| export NUM_THREADS=12 | |
| fi | |
| echo "NUM_THREADS=$NUM_THREADS" >> $GITHUB_ENV | |
| echo "CMAKE_BUILD_PARALLEL_LEVEL=$NUM_THREADS" >> $GITHUB_ENV | |
| echo "NUM_THREADS=$NUM_THREADS" | |
| - name: Download binary-demo | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: binary-demo | |
| path: dataset/binary-demo | |
| - name: Ensure Python dependencies | |
| run: | | |
| pip3 install torch~=2.2.0 --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip3 install --user -r tools/python_api/requirements_dev.txt -f https://data.pyg.org/whl/torch-2.2.0+cpu.html | |
| - name: Ensure Node.js dependencies | |
| run: npm install --include=dev | |
| working-directory: tools/nodejs_api | |
| - name: Test | |
| run: | | |
| ulimit -n 10240 | |
| ln -s /Users/runner/ldbc-1-csv dataset/ldbc-1/csv | |
| make test | |
| - name: Test in mem | |
| env: | |
| IN_MEM_MODE: true | |
| run: | | |
| make test | |
| - name: Test checkpoint at threshold 0 | |
| env: | |
| AUTO_CHECKPOINT: true | |
| CHECKPOINT_THRESHOLD: 0 | |
| run: | | |
| make test | |
| - name: Python test | |
| env: | |
| PYBIND11_PYTHON_VERSION: 3.12 | |
| run: | | |
| ulimit -n 10240 | |
| make pytest | |
| - name: C and C++ Examples | |
| run: | | |
| ulimit -n 10240 | |
| make example | |
| - name: Node.js test | |
| run: | | |
| ulimit -n 10240 | |
| make nodejstest | |
| - name: Java test | |
| run: | | |
| ulimit -n 10240 | |
| export JAVA_HOME=`/usr/libexec/java_home` | |
| make javatest | |
| - name: Rust test | |
| run: | | |
| ulimit -n 10240 | |
| source /Users/runner/.cargo/env | |
| make rusttest | |
| - name: Rust example | |
| working-directory: examples/rust | |
| run: | | |
| ulimit -n 10240 | |
| source /Users/runner/.cargo/env | |
| cargo build --locked --features arrow | |
| # TODO(bmwinger): rust pre-built library test for macos | |
| # When last tried it had issues finding libkuzu.dylib when running the tests | |
| # Using LD_LIBRARY_PATH (and similar variables) did not work for some reason | |
| shell-test: | |
| name: shell test | |
| runs-on: ubuntu-latest | |
| needs: [sanity-checks] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build | |
| run: make release NUM_THREADS=$(nproc) | |
| - name: Test | |
| working-directory: tools/shell/test | |
| run: | | |
| pip3 install pytest pexpect | |
| python3 -m pytest -v . | |
| linux-extension-test: | |
| name: linux extension test | |
| needs: [gcc-build-test, clang-build-test] | |
| runs-on: kuzu-self-hosted-testing | |
| env: | |
| NUM_THREADS: 32 | |
| TEST_JOBS: 16 | |
| CLANGD_DIAGNOSTIC_JOBS: 32 | |
| CLANGD_DIAGNOSTIC_INSTANCES: 6 | |
| GEN: Ninja | |
| CC: gcc | |
| CXX: g++ | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| RUN_ID: "$(hostname)-$(date +%s)" | |
| HTTP_CACHE_FILE: TRUE | |
| ASAN_OPTIONS: detect_leaks=1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Update PostgreSQL host | |
| working-directory: extension/postgres/test/test_files | |
| env: | |
| FNAME: postgres.test | |
| FIND: "localhost" | |
| run: | | |
| node -e 'fs=require("fs");fs.readFile(process.env.FNAME,"utf8",(err,data)=>{if(err!=null)throw err;fs.writeFile(process.env.FNAME,data.replaceAll(process.env.FIND,process.env.PG_HOST),"utf8",e=>{if(e!=null)throw e;});});' | |
| cat postgres.test | |
| - name: Install dependencies | |
| run: pip install rangehttpserver | |
| # shell needs to be built first to generate the dataset provided by the server | |
| - name: Extension test build | |
| run: make extension-test-build | |
| - name: Extension test | |
| run: | | |
| python3 scripts/generate-tinysnb.py | |
| cd scripts/ && python3 http-server.py & | |
| make extension-test | |
| - name: Extension test in mem | |
| env: | |
| IN_MEM_MODE: true | |
| HTTP_CACHE_FILE: false | |
| run: | | |
| make extension-test && make clean | |
| # TODO(Royi) there is currently a known memory leak issue in the DuckDB postgres/delta extension so we avoid running the postgres/delta extension tests with Leak Sanitizer | |
| - name: Extension test with asan | |
| run: | | |
| make clean && make extension-test ASAN=1 WERROR=0 EXTENSION_TEST_EXCLUDE_FILTER="(delta|postgres)" && make clean | |
| macos-extension-test: | |
| name: macos extension test | |
| needs: [macos-build-test] | |
| runs-on: [self-hosted, macOS] | |
| env: | |
| TEST_JOBS: 16 | |
| GEN: Ninja | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| PG_HOST: ${{ secrets.PG_HOST }} | |
| RUN_ID: "$(hostname)-$(date +%s)" | |
| HTTP_CACHE_FILE: TRUE | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Determine NUM_THREADS | |
| run: | | |
| export NUM_THREADS=$(($(sysctl -n hw.logicalcpu) * 2 / 3)) | |
| if [ $NUM_THREADS -lt 12 ]; then | |
| export NUM_THREADS=12 | |
| fi | |
| echo "NUM_THREADS=$NUM_THREADS" >> $GITHUB_ENV | |
| echo "NUM_THREADS=$NUM_THREADS" | |
| - name: Update PostgreSQL host | |
| working-directory: extension/postgres/test/test_files | |
| env: | |
| FNAME: postgres.test | |
| FIND: "localhost" | |
| run: | | |
| node -e 'fs=require("fs");fs.readFile(process.env.FNAME,"utf8",(err,data)=>{if(err!=null)throw err;fs.writeFile(process.env.FNAME,data.replaceAll(process.env.FIND,process.env.PG_HOST),"utf8",e=>{if(e!=null)throw e;});});' | |
| cat postgres.test | |
| - name: Install dependencies | |
| run: pip3 install rangehttpserver | |
| # shell needs to be built first to generate the dataset provided by the server | |
| - name: Extension test build | |
| run: make extension-test-build | |
| - name: Extension test | |
| run: | | |
| python3 scripts/generate-tinysnb.py | |
| cd scripts/ && python3 http-server.py & | |
| make extension-test | |
| - name: Extension test in mem | |
| env: | |
| IN_MEM_MODE: true | |
| HTTP_CACHE_FILE: false | |
| run: | | |
| make extension-test && make clean | |
| windows-extension-test: | |
| name: windows extension test | |
| needs: [msvc-build-test] | |
| runs-on: self-hosted-windows | |
| env: | |
| # Shorten build path as much as possible | |
| CARGO_TARGET_DIR: ${{ github.workspace }}/rs | |
| CARGO_BUILD_JOBS: 18 | |
| NUM_THREADS: 18 | |
| TEST_JOBS: 9 | |
| UW_S3_ACCESS_KEY_ID: ${{ secrets.UW_S3_ACCESS_KEY_ID }} | |
| UW_S3_SECRET_ACCESS_KEY: ${{ secrets.UW_S3_SECRET_ACCESS_KEY }} | |
| AWS_S3_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_S3_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_S3_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_S3_SECRET_ACCESS_KEY }} | |
| PG_HOST: ${{ secrets.PG_HOST }} | |
| RUN_ID: "$(hostname)-$([Math]::Floor((Get-Date).TimeOfDay.TotalSeconds))" | |
| HTTP_CACHE_FILE: TRUE | |
| WERROR: 0 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| run: pip install rangehttpserver | |
| - name: Update PostgreSQL host | |
| working-directory: extension/postgres/test/test_files | |
| env: | |
| FNAME: postgres.test | |
| FIND: "localhost" | |
| run: | | |
| $fname = $env:FNAME | |
| $find = $env:FIND | |
| $replace = $env:PG_HOST | |
| $content = Get-Content -Path $fname | |
| $content = $content -replace [regex]::Escape($find), $replace | |
| Set-Content -Path $fname -Value $content | |
| cat $fname | |
| - name: Extension test build | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make extension-test-build | |
| - name: Extension test | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| python3 scripts/generate-tinysnb.py | |
| if %errorlevel% neq 0 exit /b %errorlevel% | |
| cd scripts/ && start /b python http-server.py && cd .. | |
| make extension-test | |
| - name: Extension test in mem | |
| shell: cmd | |
| env: | |
| IN_MEM_MODE: true | |
| HTTP_CACHE_FILE: false | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| python3 scripts/generate-tinysnb.py | |
| if %errorlevel% neq 0 exit /b %errorlevel% | |
| cd scripts/ && start /b python http-server.py && cd .. | |
| make extension-test | |
| - name: Clean | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Auxiliary\Build\vcvars64.bat" | |
| make clean |