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24 Open 178 Closed
24 Open 178 Closed
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Issues list

Missing key reactions in reactions list of pathway
#245 opened Dec 3, 2024 by Porthmeus
request, mega medium
#244 opened Nov 22, 2024 by mmpust
2
Gapfilling a model after gapseq adapt?
#243 opened Nov 13, 2024 by LucoDevro
Subunit detection is returning wrong numbers
#241 opened Nov 7, 2024 by Porthmeus
Archaea reconstruction does not predict Methanogenesis anymore
#234 opened Sep 5, 2024 by cdiener
@jotech
3
Gapfilling fails in step 1 for Archaea on the gut medium
#232 opened Aug 28, 2024 by cdiener
@Waschina
12
Gapseq returns models based on SEED reactions even when database is specified as vmh
#227 opened Jul 25, 2024 by anubhavdas0907
transporter prediction leads to a zerobytes Transporter.tbl result
#223 opened Jul 2, 2024 by Lishijiagg
2
Comparison of amino acid auxotrophy prediction with GapMind
#220 opened Jun 24, 2024 by mgabriell1
@Waschina
3
Exploit gapfilled model for metabolic comparison
#219 opened May 31, 2024 by mgabriell1
5
windows installation problems
#218 opened May 31, 2024 by Fake-star
7
Possible inconsistencies in pathway completeness percentages.
#216 opened May 12, 2024 by avandieren
2
Inquiry on error
#213 opened Apr 9, 2024 by songmj86
5
adding pathways| Error: No model reactions found and Error: Error in !opt$sbml.no.output : invalid argument type
#211 opened Apr 3, 2024 by wtscott31
6
Reaction inferred from pseudogene regions when using gapseq on genome fasta file.
#199 opened Nov 22, 2023 by ArnaudBelcour
How was dat/media/gut.csv formulated?
#189 opened Jul 31, 2023 by alsmadin01
Annotated output file or supply a genome-annotated file? enhancement
#183 opened May 31, 2023 by bananabenana
1
Make the pathway threshold a tunable parameter
#182 opened May 12, 2023 by sulheim
adapt: already growing with glucose but model.optimize() = 0
#171 opened Mar 10, 2023 by danfrks
cross-feeding and which medium should I use?
#161 opened Feb 10, 2023 by mhjonathan
8
improve sulfur metabolism in models enhancement
#131 opened Aug 9, 2022 by jotech
2
community simulation media help wanted
#125 opened Jun 27, 2022 by H1889
7
[feature request] conda package enhancement
#60 opened Mar 15, 2021 by cdiener
10
Could I apply this tool to other species? enhancement
#44 opened Oct 28, 2020 by iaunicorn
4
ProTip! Updated in the last three days: updated:>2024-12-10.